6LYM
Crystal structure of D657A mutant of formylglycinamidine synthetase
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0004642 | molecular_function | phosphoribosylformylglycinamidine synthase activity |
| A | 0005524 | molecular_function | ATP binding |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0006164 | biological_process | purine nucleotide biosynthetic process |
| A | 0006189 | biological_process | 'de novo' IMP biosynthetic process |
| A | 0016874 | molecular_function | ligase activity |
| A | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 31 |
| Details | binding site for residue ADP A 1301 |
| Chain | Residue |
| A | VAL333 |
| A | ALA678 |
| A | ASP679 |
| A | GLU718 |
| A | ASN722 |
| A | SER886 |
| A | MG1302 |
| A | MG1303 |
| A | MG1304 |
| A | HOH1433 |
| A | HOH1437 |
| A | THR386 |
| A | HOH1460 |
| A | HOH1523 |
| A | HOH1537 |
| A | HOH1542 |
| A | HOH1544 |
| A | HOH1577 |
| A | HOH1593 |
| A | HOH1597 |
| A | HOH1629 |
| A | HOH1632 |
| A | GLY387 |
| A | HOH1635 |
| A | HOH1644 |
| A | TYR388 |
| A | PHE389 |
| A | LYS649 |
| A | LEU652 |
| A | GLN668 |
| A | PRO676 |
| site_id | AC2 |
| Number of Residues | 6 |
| Details | binding site for residue MG A 1302 |
| Chain | Residue |
| A | ASP679 |
| A | ASN722 |
| A | ASP884 |
| A | ADP1301 |
| A | HOH1577 |
| A | HOH1644 |
| site_id | AC3 |
| Number of Residues | 6 |
| Details | binding site for residue MG A 1303 |
| Chain | Residue |
| A | GLU718 |
| A | ADP1301 |
| A | HOH1431 |
| A | HOH1460 |
| A | HOH1523 |
| A | HOH1544 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | binding site for residue MG A 1304 |
| Chain | Residue |
| A | ADP1301 |
| A | HOH1433 |
| A | HOH1437 |
| A | HOH1542 |
| A | HOH1629 |
| site_id | AC5 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 A 1305 |
| Chain | Residue |
| A | GLU294 |
| A | GLY504 |
| A | ALA505 |
| A | HOH1415 |
| site_id | AC6 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 A 1306 |
| Chain | Residue |
| A | THR295 |
| A | HIS296 |
| A | ASN297 |
| A | HIS298 |
| A | SER778 |
| site_id | AC7 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 A 1307 |
| Chain | Residue |
| A | TYR690 |
| A | ARG812 |
| A | LYS1228 |
| A | VAL1229 |
| A | HOH1448 |
| site_id | AC8 |
| Number of Residues | 6 |
| Details | binding site for residue SO4 A 1308 |
| Chain | Residue |
| A | GLN1176 |
| A | GLN1183 |
| A | GLY1184 |
| A | MET1185 |
| A | VAL1186 |
| A | HOH1576 |
| site_id | AC9 |
| Number of Residues | 7 |
| Details | binding site for residue SO4 A 1309 |
| Chain | Residue |
| A | HIS1086 |
| A | ARG1126 |
| A | PRO1127 |
| A | GLN1128 |
| A | THR1129 |
| A | HOH1425 |
| A | HOH1618 |
| site_id | AD1 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 A 1310 |
| Chain | Residue |
| A | GLN767 |
| A | ASP859 |
| A | VAL860 |
| A | ALA861 |
| site_id | AD2 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 A 1311 |
| Chain | Residue |
| A | VAL432 |
| A | THR581 |
| A | GLU582 |
| A | GLU583 |
| site_id | AD3 |
| Number of Residues | 6 |
| Details | binding site for residue SO4 A 1312 |
| Chain | Residue |
| A | TRP305 |
| A | ARG1159 |
| A | ARG1164 |
| A | HOH1447 |
| A | HOH1583 |
| A | HOH1695 |
| site_id | AD4 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 A 1313 |
| Chain | Residue |
| A | PRO1040 |
| A | LYS1041 |
| A | HIS1086 |
| A | HOH1422 |
| site_id | AD5 |
| Number of Residues | 2 |
| Details | binding site for residue SO4 A 1314 |
| Chain | Residue |
| A | ASN1113 |
| A | ARG1115 |
| site_id | AD6 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 A 1315 |
| Chain | Residue |
| A | HIS1161 |
| A | SER12 |
| A | ALA13 |
| A | PHE14 |
| A | ASN998 |
| site_id | AD7 |
| Number of Residues | 2 |
| Details | binding site for residue SO4 A 1316 |
| Chain | Residue |
| A | HIS68 |
| A | THR69 |
| site_id | AD8 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 A 1317 |
| Chain | Residue |
| A | ALA911 |
| A | VAL952 |
| A | HIS953 |
| site_id | AD9 |
| Number of Residues | 2 |
| Details | binding site for residue SO4 A 1318 |
| Chain | Residue |
| A | HIS153 |
| A | GLN154 |
| site_id | AE1 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 A 1319 |
| Chain | Residue |
| A | PRO356 |
| A | GLU357 |
| A | ARG358 |
| site_id | AE2 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 A 1320 |
| Chain | Residue |
| A | THR632 |
| A | ILE633 |
| A | HOH1420 |
| A | HOH1496 |
| A | HOH1778 |
| site_id | AE3 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 A 1321 |
| Chain | Residue |
| A | LYS833 |
| A | HIS835 |
| A | HOH1419 |
| site_id | AE4 |
| Number of Residues | 7 |
| Details | binding site for residue SO4 A 1322 |
| Chain | Residue |
| A | VAL616 |
| A | GLN617 |
| A | PRO747 |
| A | GLY748 |
| A | HOH1432 |
| A | HOH1532 |
| A | HOH1622 |
| site_id | AE5 |
| Number of Residues | 6 |
| Details | binding site for residue GOL A 1323 |
| Chain | Residue |
| A | LYS327 |
| A | ARG479 |
| A | ASN1051 |
| A | VAL1054 |
| A | GLU1055 |
| A | HOH1428 |
| site_id | AE6 |
| Number of Residues | 2 |
| Details | binding site for residue EDO A 1324 |
| Chain | Residue |
| A | ASN1251 |
| A | ARG1253 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 22 |
| Details | Region: {"description":"Disordered","evidences":[{"source":"SAM","id":"MobiDB-lite","evidenceCode":"ECO:0000256"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 1 |
| Details | Active site: {"description":"Nucleophile","evidences":[{"source":"HAMAP-Rule","id":"MF_00419","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 2 |
| Details | Active site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00419","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 11 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00419","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 4 |
| Details | Binding site: {} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 4 |
| Details | Binding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00419","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"15301531","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"22683785","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"24223728","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |






