6LTH

Structure of human BAF Base module

Functional Information from GO Data

Chain	GOid	namespace	contents
I	0000122	biological_process	negative regulation of transcription by RNA polymerase II
I	0000166	molecular_function	nucleotide binding
I	0000776	cellular_component	kinetochore
I	0000785	cellular_component	chromatin
I	0001164	molecular_function	RNA polymerase I core promoter sequence-specific DNA binding
I	0001188	biological_process	RNA polymerase I preinitiation complex assembly
I	0001221	molecular_function	transcription coregulator binding
I	0001650	cellular_component	fibrillar center
I	0002039	molecular_function	p53 binding
I	0003407	biological_process	neural retina development
I	0003677	molecular_function	DNA binding
I	0003682	molecular_function	chromatin binding
I	0003713	molecular_function	transcription coactivator activity
I	0003714	molecular_function	transcription corepressor activity
I	0003723	molecular_function	RNA binding
I	0004386	molecular_function	helicase activity
I	0005515	molecular_function	protein binding
I	0005524	molecular_function	ATP binding
I	0005615	cellular_component	extracellular space
I	0005634	cellular_component	nucleus
I	0005654	cellular_component	nucleoplasm
I	0005730	cellular_component	nucleolus
I	0006325	biological_process	chromatin organization
I	0006337	biological_process	nucleosome disassembly
I	0006338	biological_process	chromatin remodeling
I	0006351	biological_process	DNA-templated transcription
I	0006355	biological_process	regulation of DNA-templated transcription
I	0006357	biological_process	regulation of transcription by RNA polymerase II
I	0007399	biological_process	nervous system development
I	0008094	molecular_function	ATP-dependent activity, acting on DNA
I	0008284	biological_process	positive regulation of cell population proliferation
I	0016020	cellular_component	membrane
I	0016363	cellular_component	nuclear matrix
I	0016514	cellular_component	SWI/SNF complex
I	0016787	molecular_function	hydrolase activity
I	0016887	molecular_function	ATP hydrolysis activity
I	0030071	biological_process	regulation of mitotic metaphase/anaphase transition
I	0030177	biological_process	positive regulation of Wnt signaling pathway
I	0030308	biological_process	negative regulation of cell growth
I	0030957	molecular_function	Tat protein binding
I	0031492	molecular_function	nucleosomal DNA binding
I	0031507	biological_process	heterochromatin formation
I	0032991	cellular_component	protein-containing complex
I	0042393	molecular_function	histone binding
I	0042802	molecular_function	identical protein binding
I	0043923	biological_process	host-mediated activation of viral transcription
I	0045582	biological_process	positive regulation of T cell differentiation
I	0045596	biological_process	negative regulation of cell differentiation
I	0045597	biological_process	positive regulation of cell differentiation
I	0045663	biological_process	positive regulation of myoblast differentiation
I	0045815	biological_process	transcription initiation-coupled chromatin remodeling
I	0045892	biological_process	negative regulation of DNA-templated transcription
I	0045893	biological_process	positive regulation of DNA-templated transcription
I	0045944	biological_process	positive regulation of transcription by RNA polymerase II
I	0050681	molecular_function	nuclear androgen receptor binding
I	0060766	biological_process	negative regulation of androgen receptor signaling pathway
I	0070182	molecular_function	DNA polymerase binding
I	0070316	biological_process	regulation of G0 to G1 transition
I	0071564	cellular_component	npBAF complex
I	0071565	cellular_component	nBAF complex
I	0120162	biological_process	positive regulation of cold-induced thermogenesis
I	0140658	molecular_function	ATP-dependent chromatin remodeler activity
I	0140750	molecular_function	nucleosome array spacer activity
I	1901798	biological_process	positive regulation of signal transduction by p53 class mediator
I	1901838	biological_process	positive regulation of transcription of nucleolar large rRNA by RNA polymerase I
I	1902459	biological_process	positive regulation of stem cell population maintenance
I	1902661	biological_process	positive regulation of glucose mediated signaling pathway
I	1902895	biological_process	positive regulation of miRNA transcription
I	2000045	biological_process	regulation of G1/S transition of mitotic cell cycle
I	2000781	biological_process	positive regulation of double-strand break repair
I	2000819	biological_process	regulation of nucleotide-excision repair
L	0000785	cellular_component	chromatin
L	0003677	molecular_function	DNA binding
L	0003713	molecular_function	transcription coactivator activity
L	0005515	molecular_function	protein binding
L	0005634	cellular_component	nucleus
L	0005654	cellular_component	nucleoplasm
L	0006325	biological_process	chromatin organization
L	0006337	biological_process	nucleosome disassembly
L	0006338	biological_process	chromatin remodeling
L	0006351	biological_process	DNA-templated transcription
L	0006357	biological_process	regulation of transcription by RNA polymerase II
L	0007399	biological_process	nervous system development
L	0016514	cellular_component	SWI/SNF complex
L	0016922	molecular_function	nuclear receptor binding
L	0030071	biological_process	regulation of mitotic metaphase/anaphase transition
L	0031491	molecular_function	nucleosome binding
L	0035060	cellular_component	brahma complex
L	0045582	biological_process	positive regulation of T cell differentiation
L	0045597	biological_process	positive regulation of cell differentiation
L	0045663	biological_process	positive regulation of myoblast differentiation
L	0045815	biological_process	transcription initiation-coupled chromatin remodeling
L	0045893	biological_process	positive regulation of DNA-templated transcription
L	0070316	biological_process	regulation of G0 to G1 transition
L	0071564	cellular_component	npBAF complex
L	0071565	cellular_component	nBAF complex
L	1902459	biological_process	positive regulation of stem cell population maintenance
L	2000045	biological_process	regulation of G1/S transition of mitotic cell cycle
L	2000781	biological_process	positive regulation of double-strand break repair
L	2000819	biological_process	regulation of nucleotide-excision repair
M	0000228	cellular_component	nuclear chromosome
M	0000776	cellular_component	kinetochore
M	0000785	cellular_component	chromatin
M	0001164	molecular_function	RNA polymerase I core promoter sequence-specific DNA binding
M	0001188	biological_process	RNA polymerase I preinitiation complex assembly
M	0001650	cellular_component	fibrillar center
M	0001741	cellular_component	XY body
M	0002039	molecular_function	p53 binding
M	0003677	molecular_function	DNA binding
M	0003713	molecular_function	transcription coactivator activity
M	0005515	molecular_function	protein binding
M	0005634	cellular_component	nucleus
M	0005654	cellular_component	nucleoplasm
M	0005730	cellular_component	nucleolus
M	0006325	biological_process	chromatin organization
M	0006337	biological_process	nucleosome disassembly
M	0006338	biological_process	chromatin remodeling
M	0006351	biological_process	DNA-templated transcription
M	0006357	biological_process	regulation of transcription by RNA polymerase II
M	0007399	biological_process	nervous system development
M	0015074	biological_process	DNA integration
M	0016363	cellular_component	nuclear matrix
M	0016514	cellular_component	SWI/SNF complex
M	0030071	biological_process	regulation of mitotic metaphase/anaphase transition
M	0030957	molecular_function	Tat protein binding
M	0031492	molecular_function	nucleosomal DNA binding
M	0032991	cellular_component	protein-containing complex
M	0035060	cellular_component	brahma complex
M	0039692	biological_process	single stranded viral RNA replication via double stranded DNA intermediate
M	0042802	molecular_function	identical protein binding
M	0043923	biological_process	host-mediated activation of viral transcription
M	0045582	biological_process	positive regulation of T cell differentiation
M	0045597	biological_process	positive regulation of cell differentiation
M	0045663	biological_process	positive regulation of myoblast differentiation
M	0045815	biological_process	transcription initiation-coupled chromatin remodeling
M	0045944	biological_process	positive regulation of transcription by RNA polymerase II
M	0070316	biological_process	regulation of G0 to G1 transition
M	0071564	cellular_component	npBAF complex
M	0071565	cellular_component	nBAF complex
M	1901838	biological_process	positive regulation of transcription of nucleolar large rRNA by RNA polymerase I
M	1902459	biological_process	positive regulation of stem cell population maintenance
M	1902661	biological_process	positive regulation of glucose mediated signaling pathway
M	2000045	biological_process	regulation of G1/S transition of mitotic cell cycle
M	2000781	biological_process	positive regulation of double-strand break repair
M	2000819	biological_process	regulation of nucleotide-excision repair
N	0000776	cellular_component	kinetochore
N	0000785	cellular_component	chromatin
N	0003713	molecular_function	transcription coactivator activity
N	0005515	molecular_function	protein binding
N	0005634	cellular_component	nucleus
N	0005654	cellular_component	nucleoplasm
N	0006325	biological_process	chromatin organization
N	0006337	biological_process	nucleosome disassembly
N	0006338	biological_process	chromatin remodeling
N	0006351	biological_process	DNA-templated transcription
N	0006355	biological_process	regulation of DNA-templated transcription
N	0006357	biological_process	regulation of transcription by RNA polymerase II
N	0007399	biological_process	nervous system development
N	0016363	cellular_component	nuclear matrix
N	0016514	cellular_component	SWI/SNF complex
N	0030071	biological_process	regulation of mitotic metaphase/anaphase transition
N	0031492	molecular_function	nucleosomal DNA binding
N	0032991	cellular_component	protein-containing complex
N	0042393	molecular_function	histone binding
N	0045582	biological_process	positive regulation of T cell differentiation
N	0045597	biological_process	positive regulation of cell differentiation
N	0045663	biological_process	positive regulation of myoblast differentiation
N	0045892	biological_process	negative regulation of DNA-templated transcription
N	0045893	biological_process	positive regulation of DNA-templated transcription
N	0070316	biological_process	regulation of G0 to G1 transition
N	0071564	cellular_component	npBAF complex
N	0071565	cellular_component	nBAF complex
N	2000045	biological_process	regulation of G1/S transition of mitotic cell cycle
N	2000781	biological_process	positive regulation of double-strand break repair
N	2000819	biological_process	regulation of nucleotide-excision repair
O	0000776	cellular_component	kinetochore
O	0000785	cellular_component	chromatin
O	0003713	molecular_function	transcription coactivator activity
O	0005515	molecular_function	protein binding
O	0005634	cellular_component	nucleus
O	0005654	cellular_component	nucleoplasm
O	0006325	biological_process	chromatin organization
O	0006337	biological_process	nucleosome disassembly
O	0006338	biological_process	chromatin remodeling
O	0006351	biological_process	DNA-templated transcription
O	0006355	biological_process	regulation of DNA-templated transcription
O	0006357	biological_process	regulation of transcription by RNA polymerase II
O	0007399	biological_process	nervous system development
O	0016363	cellular_component	nuclear matrix
O	0016514	cellular_component	SWI/SNF complex
O	0030071	biological_process	regulation of mitotic metaphase/anaphase transition
O	0031492	molecular_function	nucleosomal DNA binding
O	0032991	cellular_component	protein-containing complex
O	0042393	molecular_function	histone binding
O	0045582	biological_process	positive regulation of T cell differentiation
O	0045597	biological_process	positive regulation of cell differentiation
O	0045663	biological_process	positive regulation of myoblast differentiation
O	0045892	biological_process	negative regulation of DNA-templated transcription
O	0045893	biological_process	positive regulation of DNA-templated transcription
O	0070316	biological_process	regulation of G0 to G1 transition
O	0071564	cellular_component	npBAF complex
O	0071565	cellular_component	nBAF complex
O	2000045	biological_process	regulation of G1/S transition of mitotic cell cycle
O	2000781	biological_process	positive regulation of double-strand break repair
O	2000819	biological_process	regulation of nucleotide-excision repair
P	0000776	cellular_component	kinetochore
P	0000785	cellular_component	chromatin
P	0003682	molecular_function	chromatin binding
P	0003712	molecular_function	transcription coregulator activity
P	0003713	molecular_function	transcription coactivator activity
P	0005102	molecular_function	signaling receptor binding
P	0005515	molecular_function	protein binding
P	0005634	cellular_component	nucleus
P	0005654	cellular_component	nucleoplasm
P	0006325	biological_process	chromatin organization
P	0006337	biological_process	nucleosome disassembly
P	0006338	biological_process	chromatin remodeling
P	0006357	biological_process	regulation of transcription by RNA polymerase II
P	0007399	biological_process	nervous system development
P	0008284	biological_process	positive regulation of cell population proliferation
P	0016363	cellular_component	nuclear matrix
P	0016514	cellular_component	SWI/SNF complex
P	0030071	biological_process	regulation of mitotic metaphase/anaphase transition
P	0045582	biological_process	positive regulation of T cell differentiation
P	0045596	biological_process	negative regulation of cell differentiation
P	0045597	biological_process	positive regulation of cell differentiation
P	0045663	biological_process	positive regulation of myoblast differentiation
P	0045815	biological_process	transcription initiation-coupled chromatin remodeling
P	0045893	biological_process	positive regulation of DNA-templated transcription
P	0060090	molecular_function	molecular adaptor activity
P	0070316	biological_process	regulation of G0 to G1 transition
P	0071398	biological_process	cellular response to fatty acid
P	0071564	cellular_component	npBAF complex
P	0071565	cellular_component	nBAF complex
P	1902459	biological_process	positive regulation of stem cell population maintenance
P	2000045	biological_process	regulation of G1/S transition of mitotic cell cycle
P	2000781	biological_process	positive regulation of double-strand break repair
P	2000819	biological_process	regulation of nucleotide-excision repair
Q	0000228	cellular_component	nuclear chromosome
Q	0000776	cellular_component	kinetochore
Q	0000785	cellular_component	chromatin
Q	0003677	molecular_function	DNA binding
Q	0003682	molecular_function	chromatin binding
Q	0003713	molecular_function	transcription coactivator activity
Q	0003723	molecular_function	RNA binding
Q	0005515	molecular_function	protein binding
Q	0005634	cellular_component	nucleus
Q	0005654	cellular_component	nucleoplasm
Q	0006325	biological_process	chromatin organization
Q	0006337	biological_process	nucleosome disassembly
Q	0006338	biological_process	chromatin remodeling
Q	0006357	biological_process	regulation of transcription by RNA polymerase II
Q	0007399	biological_process	nervous system development
Q	0008080	molecular_function	N-acetyltransferase activity
Q	0016363	cellular_component	nuclear matrix
Q	0016514	cellular_component	SWI/SNF complex
Q	0016922	molecular_function	nuclear receptor binding
Q	0030071	biological_process	regulation of mitotic metaphase/anaphase transition
Q	0031492	molecular_function	nucleosomal DNA binding
Q	0032991	cellular_component	protein-containing complex
Q	0045582	biological_process	positive regulation of T cell differentiation
Q	0045597	biological_process	positive regulation of cell differentiation
Q	0045663	biological_process	positive regulation of myoblast differentiation
Q	0045892	biological_process	negative regulation of DNA-templated transcription
Q	0045893	biological_process	positive regulation of DNA-templated transcription
Q	0070316	biological_process	regulation of G0 to G1 transition
Q	0071564	cellular_component	npBAF complex
Q	0071565	cellular_component	nBAF complex
Q	1902459	biological_process	positive regulation of stem cell population maintenance
Q	2000045	biological_process	regulation of G1/S transition of mitotic cell cycle
Q	2000781	biological_process	positive regulation of double-strand break repair
Q	2000819	biological_process	regulation of nucleotide-excision repair
R	0000122	biological_process	negative regulation of transcription by RNA polymerase II
R	0000785	cellular_component	chromatin
R	0003712	molecular_function	transcription coregulator activity
R	0003714	molecular_function	transcription corepressor activity
R	0005515	molecular_function	protein binding
R	0005634	cellular_component	nucleus
R	0005654	cellular_component	nucleoplasm
R	0005737	cellular_component	cytoplasm
R	0005829	cellular_component	cytosol
R	0006325	biological_process	chromatin organization
R	0006338	biological_process	chromatin remodeling
R	0006351	biological_process	DNA-templated transcription
R	0006355	biological_process	regulation of DNA-templated transcription
R	0006357	biological_process	regulation of transcription by RNA polymerase II
R	0006915	biological_process	apoptotic process
R	0008270	molecular_function	zinc ion binding
R	0030071	biological_process	regulation of mitotic metaphase/anaphase transition
R	0046872	molecular_function	metal ion binding
R	0062072	molecular_function	histone H3K9me2/3 reader activity
R	0070316	biological_process	regulation of G0 to G1 transition
R	0097190	biological_process	apoptotic signaling pathway
R	0140015	molecular_function	histone H3K14ac reader activity
R	0140046	molecular_function	histone H4K16ac reader activity
R	1902459	biological_process	positive regulation of stem cell population maintenance
R	1905454	biological_process	negative regulation of myeloid progenitor cell differentiation
R	2000045	biological_process	regulation of G1/S transition of mitotic cell cycle
R	2000781	biological_process	positive regulation of double-strand break repair
R	2000819	biological_process	regulation of nucleotide-excision repair

Functional Information from PDB Data

site_id	AC1
Number of Residues	4
Details	binding site for residue ZN L 2301

Chain	Residue
L	HIS2019
L	HIS2021
L	HIS2090
L	CYS2094

---

Functional Information from PROSITE/UniProt

site_id	PS00633
Number of Residues	58
Details	BROMODOMAIN_1 Bromodomain signature. SevFiqlpSrkelp..EYYelIrkpVdfkkIkerirnhk..Yrslndlekdvml.LcqNAqtF

Chain	Residue	Details
I	SER1482-PHE1539

---

site_id	PS00028
Number of Residues	22
Details	ZINC_FINGER_C2H2_1 Zinc finger C2H2 type domain signature. Cdi..CgkrYknrpglsyHyahs.H

Chain	Residue	Details
R	CYS211-HIS232

---

site_id	PS01359
Number of Residues	80
Details	ZF_PHD_1 Zinc finger PHD-type signature. CsdCgrsghpsclqftpvmmaavktyrwqcieckccnicgtsenddql.LfCdd..Cdrg.YHmyCltpsmseppegs.................................WsChlC

Chain	Residue	Details
R	CYS295-CYS374

---

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	1
Details	Modified residue: {"description":"Phosphothreonine","evidences":[{"source":"PubMed","id":"19690332","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI2
Number of Residues	12
Details	Motif: {"description":"LXXLL"}

Chain

Residue

Details

---

site_id	SWS_FT_FI3
Number of Residues	59
Details	Repeat: {"description":"1"}

Chain

Residue

Details

---

site_id	SWS_FT_FI4
Number of Residues	60
Details	Repeat: {"description":"2"}

Chain

Residue

Details

---

site_id	SWS_FT_FI5
Number of Residues	60
Details	Region: {"description":"HIV-1 integrase-binding"}

Chain

Residue

Details

---

site_id	SWS_FT_FI6
Number of Residues	59
Details	Region: {"description":"MYC-binding","evidences":[{"source":"PubMed","id":"10208879","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI7
Number of Residues	14
Details	Region: {"description":"Interaction with PPP1R15A","evidences":[{"source":"PubMed","id":"12016208","evidenceCode":"ECO:0000269"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI8
Number of Residues	82
Details	Coiled coil: {"evidences":[{"evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI9
Number of Residues	97
Details	Domain: {"description":"SWIRM","evidences":[{"source":"PROSITE-ProRule","id":"PRU00247","evidenceCode":"ECO:0000255"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI10
Number of Residues	2
Details	Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)","evidences":[{"source":"PubMed","id":"25755297","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"28112733","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---

site_id	SWS_FT_FI11
Number of Residues	1
Details	Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"19690332","evidenceCode":"ECO:0007744"},{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]}

Chain

Residue

Details

---