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6LRG

Crystal Structure of the Ternary Complex of AgrE with Ornithine and NAD+

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0008473molecular_functionornithine cyclodeaminase activity
A0016787molecular_functionhydrolase activity
A0016829molecular_functionlyase activity
B0000166molecular_functionnucleotide binding
B0008473molecular_functionornithine cyclodeaminase activity
B0016787molecular_functionhydrolase activity
B0016829molecular_functionlyase activity
Functional Information from PDB Data
site_idAC1
Number of Residues26
Detailsbinding site for residue NAD A 801
ChainResidue
APRO497
AASP603
ASER634
ASER635
AMET636
ALEU637
AHIS638
AASP656
AILE657
AASN658
AVAL661
AVAL498
ATHR678
AASP679
AVAL680
AHOH904
AHOH907
BMET636
BLEU637
AGLY523
AASN524
AALA525
AHIS557
ASER599
AARG601
AASP602

site_idAC2
Number of Residues10
Detailsbinding site for residue ORN A 802
ChainResidue
AILE21
AASN22
AASP65
AASN71
AARG90
AARG139
ATYR167
AHIS168
AALA258
ACYS264

site_idAC3
Number of Residues11
Detailsbinding site for residue ORN B 801
ChainResidue
BILE21
BASN22
BASP65
BPHE68
BASN71
BARG90
BARG139
BTYR167
BHIS168
BALA258
BCYS264

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues518
DetailsRegion: {"description":"Arginine dihydrolase","evidences":[{"source":"PubMed","id":"30636068","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues2
DetailsActive site: {"description":"Proton donor/acceptor","evidences":[{"source":"PubMed","id":"32198136","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsActive site: {"description":"Nucleophile","evidences":[{"source":"PubMed","id":"32198136","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues30
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"32198136","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6LRG","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI5
Number of Residues8
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"32198136","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6LRH","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI6
Number of Residues2
DetailsSite: {"description":"Key determinant for dihydrolase activity","evidences":[{"source":"PubMed","id":"32198136","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

246905

PDB entries from 2025-12-31

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