6LNA
YdiU complex with AMPNPP and Mn2+
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0000166 | molecular_function | nucleotide binding |
| A | 0000287 | molecular_function | magnesium ion binding |
| A | 0005524 | molecular_function | ATP binding |
| A | 0016740 | molecular_function | transferase activity |
| A | 0016779 | molecular_function | nucleotidyltransferase activity |
| A | 0018117 | biological_process | protein adenylylation |
| A | 0030145 | molecular_function | manganese ion binding |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0070733 | molecular_function | AMPylase activity |
| B | 0000166 | molecular_function | nucleotide binding |
| B | 0000287 | molecular_function | magnesium ion binding |
| B | 0005524 | molecular_function | ATP binding |
| B | 0016740 | molecular_function | transferase activity |
| B | 0016779 | molecular_function | nucleotidyltransferase activity |
| B | 0018117 | biological_process | protein adenylylation |
| B | 0030145 | molecular_function | manganese ion binding |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0070733 | molecular_function | AMPylase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 4 |
| Details | binding site for residue MN A 501 |
| Chain | Residue |
| A | ASN247 |
| A | ASP256 |
| A | ANP503 |
| A | HOH658 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | binding site for residue MN A 502 |
| Chain | Residue |
| A | ASP256 |
| A | ANP503 |
| A | HOH991 |
| A | HOH1075 |
| A | HOH1146 |
| site_id | AC3 |
| Number of Residues | 30 |
| Details | binding site for residue ANP A 503 |
| Chain | Residue |
| A | TYR71 |
| A | LEU83 |
| A | GLY84 |
| A | GLY86 |
| A | ARG87 |
| A | LYS107 |
| A | SER115 |
| A | ARG116 |
| A | GLY118 |
| A | ASP119 |
| A | GLY120 |
| A | ARG121 |
| A | ARG159 |
| A | ARG170 |
| A | ARG177 |
| A | ASP246 |
| A | ASN247 |
| A | ASP256 |
| A | MN501 |
| A | MN502 |
| A | HOH643 |
| A | HOH658 |
| A | HOH659 |
| A | HOH704 |
| A | HOH745 |
| A | HOH932 |
| A | HOH940 |
| A | HOH989 |
| A | HOH1075 |
| B | MET117 |
| site_id | AC4 |
| Number of Residues | 6 |
| Details | binding site for residue CA A 504 |
| Chain | Residue |
| A | ASP265 |
| A | HOH802 |
| A | HOH857 |
| A | HOH1084 |
| A | HOH1162 |
| A | HOH1184 |
| site_id | AC5 |
| Number of Residues | 4 |
| Details | binding site for residue MN B 501 |
| Chain | Residue |
| B | ASN247 |
| B | ASP256 |
| B | ANP503 |
| B | HOH710 |
| site_id | AC6 |
| Number of Residues | 5 |
| Details | binding site for residue MN B 502 |
| Chain | Residue |
| B | ASP256 |
| B | ANP503 |
| B | HOH960 |
| B | HOH1074 |
| B | HOH1146 |
| site_id | AC7 |
| Number of Residues | 32 |
| Details | binding site for residue ANP B 503 |
| Chain | Residue |
| A | MET117 |
| B | TYR71 |
| B | GLN75 |
| B | LEU83 |
| B | GLY84 |
| B | GLY86 |
| B | ARG87 |
| B | LYS107 |
| B | SER115 |
| B | ARG116 |
| B | GLY118 |
| B | ASP119 |
| B | GLY120 |
| B | ARG121 |
| B | ARG159 |
| B | ARG170 |
| B | ARG177 |
| B | ASP246 |
| B | ASN247 |
| B | ASP256 |
| B | MN501 |
| B | MN502 |
| B | HOH636 |
| B | HOH710 |
| B | HOH791 |
| B | HOH796 |
| B | HOH844 |
| B | HOH907 |
| B | HOH919 |
| B | HOH1040 |
| B | HOH1061 |
| B | HOH1074 |
| site_id | AC8 |
| Number of Residues | 6 |
| Details | binding site for residue CA B 504 |
| Chain | Residue |
| B | ASP265 |
| B | HOH728 |
| B | HOH1016 |
| B | HOH1170 |
| B | HOH1197 |
| B | HOH1282 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 2 |
| Details | Active site: {"description":"Proton acceptor","evidences":[{"source":"PubMed","id":"30270044","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 8 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"32966796","evidenceCode":"ECO:0000305"},{"source":"Reference","evidenceCode":"ECO:0000305","citation":{"citationType":"submission","publicationDate":"OCT-2018","submissionDatabase":"PDB data bank","title":"Crystal structure of an uncharacterized protein.","authors":["Li B."]}},{"source":"PDB","id":"6III","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6LNA","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 8 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"32966796","evidenceCode":"ECO:0000305"},{"source":"PDB","id":"6LNA","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 4 |
| Details | Binding site: {"evidences":[{"source":"PubMed","id":"32966796","evidenceCode":"ECO:0000269"},{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"submission","publicationDate":"OCT-2018","submissionDatabase":"PDB data bank","title":"Crystal structure of an uncharacterized protein.","authors":["Li B."]}},{"source":"PDB","id":"6III","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6K20","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6LNA","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
