6LMS
Solution NMR structure cold shock domain of YB1 from Homo sapiens
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003676 | molecular_function | nucleic acid binding |
Functional Information from PROSITE/UniProt
| site_id | PS00352 |
| Number of Residues | 20 |
| Details | CSD_1 Cold-shock (CSD) domain signature. YGFInrndtkeDVFvHqTaI |
| Chain | Residue | Details |
| A | TYR72-ILE91 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 64 |
| Details | Domain: {"description":"CSD"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 5 |
| Details | Region: {"description":"C5-methylcytosine binding","evidences":[{"source":"PubMed","id":"31358969","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6A6L","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 1 |
| Details | Site: {"description":"Important for C5-methylcytosine-recognition","evidences":[{"source":"PubMed","id":"31358969","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"Phosphoserine; by PKB/AKT1","evidences":[{"source":"PubMed","id":"15806160","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"19690332","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 2 |
| Details | Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"18851979","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
