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6LFD

Crystal structure of VMB-1 at pH5.5(Bis-Tris)

Functional Information from GO Data
ChainGOidnamespacecontents
A0008270molecular_functionzinc ion binding
A0008800molecular_functionbeta-lactamase activity
A0016787molecular_functionhydrolase activity
A0017001biological_processantibiotic catabolic process
A0042597cellular_componentperiplasmic space
A0046677biological_processresponse to antibiotic
A0046872molecular_functionmetal ion binding
B0008270molecular_functionzinc ion binding
B0008800molecular_functionbeta-lactamase activity
B0016787molecular_functionhydrolase activity
B0017001biological_processantibiotic catabolic process
B0042597cellular_componentperiplasmic space
B0046677biological_processresponse to antibiotic
B0046872molecular_functionmetal ion binding
C0008270molecular_functionzinc ion binding
C0008800molecular_functionbeta-lactamase activity
C0016787molecular_functionhydrolase activity
C0017001biological_processantibiotic catabolic process
C0042597cellular_componentperiplasmic space
C0046677biological_processresponse to antibiotic
C0046872molecular_functionmetal ion binding
D0008270molecular_functionzinc ion binding
D0008800molecular_functionbeta-lactamase activity
D0016787molecular_functionhydrolase activity
D0017001biological_processantibiotic catabolic process
D0042597cellular_componentperiplasmic space
D0046677biological_processresponse to antibiotic
D0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue ZN A 301
ChainResidue
AHIS78
AHIS80
AHIS140
AZN302
AHOH477

site_idAC2
Number of Residues5
Detailsbinding site for residue ZN A 302
ChainResidue
AHOH477
AASP82
ACYS159
AHIS201
AZN301

site_idAC3
Number of Residues5
Detailsbinding site for residue ZN B 301
ChainResidue
BHIS78
BHIS80
BHIS140
BZN302
BHOH501

site_idAC4
Number of Residues5
Detailsbinding site for residue ZN B 302
ChainResidue
BASP82
BCYS159
BHIS201
BZN301
BHOH501

site_idAC5
Number of Residues8
Detailsbinding site for residue GOL B 303
ChainResidue
BLEU106
BTHR141
BGLU142
BASP174
BHOH463
BHOH492
DLYS211
DGLN214

site_idAC6
Number of Residues8
Detailsbinding site for residue GOL B 304
ChainResidue
ALYS153
BALA138
BGLU142
BASN176
BGLU179
BHOH476
DHIS212
DHOH427

site_idAC7
Number of Residues5
Detailsbinding site for residue ZN C 301
ChainResidue
CHIS78
CHIS80
CHIS140
CZN302
CHOH493

site_idAC8
Number of Residues5
Detailsbinding site for residue ZN C 302
ChainResidue
CASP82
CCYS159
CHIS201
CZN301
CHOH493

site_idAC9
Number of Residues5
Detailsbinding site for residue ZN D 301
ChainResidue
DHIS78
DHIS80
DHIS140
DZN302
DHOH486

site_idAD1
Number of Residues5
Detailsbinding site for residue ZN D 302
ChainResidue
DASP82
DCYS159
DHIS201
DZN301
DHOH486

Functional Information from PROSITE/UniProt
site_idPS00744
Number of Residues13
DetailsBETA_LACTAMASE_B_2 Beta-lactamases class B signature 2. PnekILfGgCFVK
ChainResidueDetails
APRO150-LYS162

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PDB entries from 2024-07-24

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