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6LF4

Crystal structure of VMB-1 bound to hydrolyzed meropenem

Functional Information from GO Data
ChainGOidnamespacecontents
A0008270molecular_functionzinc ion binding
A0008800molecular_functionbeta-lactamase activity
A0016787molecular_functionhydrolase activity
A0017001biological_processantibiotic catabolic process
A0042597cellular_componentperiplasmic space
A0046677biological_processresponse to antibiotic
A0046872molecular_functionmetal ion binding
B0008270molecular_functionzinc ion binding
B0008800molecular_functionbeta-lactamase activity
B0016787molecular_functionhydrolase activity
B0017001biological_processantibiotic catabolic process
B0042597cellular_componentperiplasmic space
B0046677biological_processresponse to antibiotic
B0046872molecular_functionmetal ion binding
C0008270molecular_functionzinc ion binding
C0008800molecular_functionbeta-lactamase activity
C0016787molecular_functionhydrolase activity
C0017001biological_processantibiotic catabolic process
C0042597cellular_componentperiplasmic space
C0046677biological_processresponse to antibiotic
C0046872molecular_functionmetal ion binding
D0008270molecular_functionzinc ion binding
D0008800molecular_functionbeta-lactamase activity
D0016787molecular_functionhydrolase activity
D0017001biological_processantibiotic catabolic process
D0042597cellular_componentperiplasmic space
D0046677biological_processresponse to antibiotic
D0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 301
ChainResidue
AHIS78
AHIS80
AHIS140
ALMP303

site_idAC2
Number of Residues4
Detailsbinding site for residue ZN A 302
ChainResidue
AASP82
ACYS159
AHIS201
ALMP303

site_idAC3
Number of Residues12
Detailsbinding site for residue LMP A 303
ChainResidue
ATRP52
AHIS80
AASP82
AHIS140
ALYS162
ALEU169
AGLY170
ATYR171
AHIS201
AZN301
AZN302
AILE32

site_idAC4
Number of Residues4
Detailsbinding site for residue ZN B 301
ChainResidue
BHIS78
BHIS80
BHIS140
BLMP303

site_idAC5
Number of Residues4
Detailsbinding site for residue ZN B 302
ChainResidue
BASP82
BCYS159
BHIS201
BLMP303

site_idAC6
Number of Residues13
Detailsbinding site for residue LMP B 303
ChainResidue
BILE32
BHIS80
BASP82
BHIS140
BCYS159
BLYS162
BSER163
BASN166
BTYR171
BHIS201
BZN301
BZN302
BHOH401

site_idAC7
Number of Residues4
Detailsbinding site for residue ZN C 301
ChainResidue
CHIS78
CHIS80
CHIS140
CLMP303

site_idAC8
Number of Residues4
Detailsbinding site for residue ZN C 302
ChainResidue
CASP82
CCYS159
CHIS201
CLMP303

site_idAC9
Number of Residues13
Detailsbinding site for residue LMP C 303
ChainResidue
CTRP29
CTRP52
CHIS80
CASP82
CHIS140
CCYS159
CLYS162
CASN166
CGLY170
CTYR171
CHIS201
CZN301
CZN302

site_idAD1
Number of Residues4
Detailsbinding site for residue ZN D 301
ChainResidue
DHIS78
DHIS80
DHIS140
DLMP303

site_idAD2
Number of Residues4
Detailsbinding site for residue ZN D 302
ChainResidue
DASP82
DCYS159
DHIS201
DLMP303

site_idAD3
Number of Residues15
Detailsbinding site for residue LMP D 303
ChainResidue
DTRP52
DHIS80
DGLU81
DASP82
DHIS140
DCYS159
DVAL161
DLYS162
DSER163
DASN166
DTYR171
DGLY200
DHIS201
DZN301
DZN302

Functional Information from PROSITE/UniProt
site_idPS00744
Number of Residues13
DetailsBETA_LACTAMASE_B_2 Beta-lactamases class B signature 2. PnekILfGgCFVK
ChainResidueDetails
APRO150-LYS162

221051

PDB entries from 2024-06-12

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