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6L5M

Crystal structure of human DEAD-box RNA helicase DDX21 in complex with AMP

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0003724molecular_functionRNA helicase activity
A0005524molecular_functionATP binding
B0003676molecular_functionnucleic acid binding
B0003724molecular_functionRNA helicase activity
B0005524molecular_functionATP binding
C0003676molecular_functionnucleic acid binding
C0003724molecular_functionRNA helicase activity
C0005524molecular_functionATP binding
D0003676molecular_functionnucleic acid binding
D0003724molecular_functionRNA helicase activity
D0005524molecular_functionATP binding
E0003676molecular_functionnucleic acid binding
E0003724molecular_functionRNA helicase activity
E0005524molecular_functionATP binding
Functional Information from PDB Data
site_idAC1
Number of Residues12
Detailsbinding site for residue AMP A 601
ChainResidue
AARG204
ATHR237
AHOH705
BLYS481
AGLY205
AVAL206
APHE208
APHE210
AGLN213
AGLY233
AGLY235
ALYS236

site_idAC2
Number of Residues13
Detailsbinding site for residue AMP B 601
ChainResidue
BARG204
BGLY205
BVAL206
BPHE208
BPHE210
BGLN213
BGLY233
BGLY235
BLYS236
BTHR237
BGLN275
BHOH707
CLYS481

site_idAC3
Number of Residues11
Detailsbinding site for residue AMP C 601
ChainResidue
CARG204
CGLY205
CVAL206
CPHE208
CPHE210
CGLN213
CGLY233
CGLY235
CLYS236
CTHR237
CHOH705

site_idAC4
Number of Residues12
Detailsbinding site for residue AMP D 601
ChainResidue
DARG204
DGLY205
DVAL206
DPHE208
DPHE210
DGLN213
DGLY233
DGLY235
DLYS236
DTHR237
EILE478
ELYS481

site_idAC5
Number of Residues10
Detailsbinding site for residue AMP E 601
ChainResidue
EARG204
EGLY205
EVAL206
EPHE208
EPHE210
EGLN213
EGLY233
EGLY235
ELYS236
ETHR237

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues5
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00541
ChainResidueDetails
AALA230
BALA230
CALA230
DALA230
EALA230

site_idSWS_FT_FI2
Number of Residues5
DetailsMOD_RES: Phosphothreonine => ECO:0007744|PubMed:20068231, ECO:0007744|PubMed:23186163
ChainResidueDetails
BTHR296
CTHR296
DTHR296
ETHR296
ATHR296

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PDB entries from 2024-06-12

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