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6L38

X-ray structure of human PPARalpha ligand binding domain-GW9662-gemfibrozil co-crystals obtained by delipidation and co-crystallization

Functional Information from GO Data
ChainGOidnamespacecontents
A0003677molecular_functionDNA binding
A0004879molecular_functionnuclear receptor activity
A0005634cellular_componentnucleus
A0006355biological_processregulation of DNA-templated transcription
B0003677molecular_functionDNA binding
B0004879molecular_functionnuclear receptor activity
B0005634cellular_componentnucleus
B0006355biological_processregulation of DNA-templated transcription
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue GW9 A 501
ChainResidue
AILE241
ACYS276
ATHR279
ALEU321
AMET330
AVAL332

site_idAC2
Number of Residues6
Detailsbinding site for residue GW9 A 502
ChainResidue
AASN261
AHIS274
ACYS278
ALEU254
ALYS257
ALEU258

site_idAC3
Number of Residues9
Detailsbinding site for Di-peptide GW9 B 501 and CYS B 276
ChainResidue
BILE241
BILE272
BHIS274
BCYS275
BGLN277
BCYS278
BTHR279
BSER280
BVAL332

site_idAC4
Number of Residues13
Detailsbinding site for Di-peptide GW9 B 502 and CYS B 278
ChainResidue
BLYS257
BLEU258
BASN261
BILE263
BHIS274
BCYS275
BCYS276
BGLN277
BTHR279
BSER280
BVAL281
BGLU282
BHIS457

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues454
DetailsDomain: {"description":"NR LBD","evidences":[{"source":"PROSITE-ProRule","id":"PRU01189","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues258
DetailsRegion: {"description":"Required for heterodimerization with RXRA"}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"19116277","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"3ET1","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues2
DetailsSite: {"description":"Essential for heterodimerization with RXRA"}
ChainResidueDetails

247536

PDB entries from 2026-01-14

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