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6KW4

The ClassB RSC-Nucleosome Complex

This is a non-PDB format compatible entry.
Functional Information from GO Data
ChainGOidnamespacecontents
A0000785cellular_componentchromatin
A0003674molecular_functionmolecular_function
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0006325biological_processchromatin organization
A0006337biological_processnucleosome disassembly
A0006338biological_processchromatin remodeling
A0006357biological_processregulation of transcription by RNA polymerase II
A0006368biological_processtranscription elongation by RNA polymerase II
A0016586cellular_componentRSC-type complex
B0000786cellular_componentnucleosome
B0003677molecular_functionDNA binding
B0005515molecular_functionprotein binding
B0005634cellular_componentnucleus
B0005694cellular_componentchromosome
B0006334biological_processnucleosome assembly
B0030527molecular_functionstructural constituent of chromatin
B0046982molecular_functionprotein heterodimerization activity
C0000785cellular_componentchromatin
C0000978molecular_functionRNA polymerase II cis-regulatory region sequence-specific DNA binding
C0000981molecular_functionDNA-binding transcription factor activity, RNA polymerase II-specific
C0003677molecular_functionDNA binding
C0005515molecular_functionprotein binding
C0005634cellular_componentnucleus
C0006303biological_processdouble-strand break repair via nonhomologous end joining
C0006325biological_processchromatin organization
C0006337biological_processnucleosome disassembly
C0006338biological_processchromatin remodeling
C0006355biological_processregulation of DNA-templated transcription
C0006368biological_processtranscription elongation by RNA polymerase II
C0008270molecular_functionzinc ion binding
C0016586cellular_componentRSC-type complex
C0043565molecular_functionsequence-specific DNA binding
C0045944biological_processpositive regulation of transcription by RNA polymerase II
C0046872molecular_functionmetal ion binding
D0000785cellular_componentchromatin
D0003677molecular_functionDNA binding
D0005515molecular_functionprotein binding
D0005634cellular_componentnucleus
D0006303biological_processdouble-strand break repair via nonhomologous end joining
D0006325biological_processchromatin organization
D0006337biological_processnucleosome disassembly
D0006338biological_processchromatin remodeling
D0006355biological_processregulation of DNA-templated transcription
D0006368biological_processtranscription elongation by RNA polymerase II
D0008270molecular_functionzinc ion binding
D0016514cellular_componentSWI/SNF complex
D0016586cellular_componentRSC-type complex
D0042393molecular_functionhistone binding
D0045893biological_processpositive regulation of DNA-templated transcription
D0046872molecular_functionmetal ion binding
E0000086biological_processG2/M transition of mitotic cell cycle
E0000785cellular_componentchromatin
E0003682molecular_functionchromatin binding
E0005515molecular_functionprotein binding
E0005634cellular_componentnucleus
E0006337biological_processnucleosome disassembly
E0006338biological_processchromatin remodeling
E0006368biological_processtranscription elongation by RNA polymerase II
E0016586cellular_componentRSC-type complex
F0000785cellular_componentchromatin
F0003674molecular_functionmolecular_function
F0005515molecular_functionprotein binding
F0005634cellular_componentnucleus
F0006325biological_processchromatin organization
F0006337biological_processnucleosome disassembly
F0006338biological_processchromatin remodeling
F0006368biological_processtranscription elongation by RNA polymerase II
F0016586cellular_componentRSC-type complex
F0031490molecular_functionchromatin DNA binding
G0000086biological_processG2/M transition of mitotic cell cycle
G0000228cellular_componentnuclear chromosome
G0000785cellular_componentchromatin
G0003712molecular_functiontranscription coregulator activity
G0005515molecular_functionprotein binding
G0005634cellular_componentnucleus
G0006302biological_processdouble-strand break repair
G0006325biological_processchromatin organization
G0006337biological_processnucleosome disassembly
G0006338biological_processchromatin remodeling
G0006357biological_processregulation of transcription by RNA polymerase II
G0006368biological_processtranscription elongation by RNA polymerase II
G0007059biological_processchromosome segregation
G0016586cellular_componentRSC-type complex
G0031055biological_processchromatin remodeling at centromere
G0031491molecular_functionnucleosome binding
G0033262biological_processregulation of nuclear cell cycle DNA replication
H0000785cellular_componentchromatin
H0003677molecular_functionDNA binding
H0005515molecular_functionprotein binding
H0005634cellular_componentnucleus
H0006303biological_processdouble-strand break repair via nonhomologous end joining
H0006325biological_processchromatin organization
H0006337biological_processnucleosome disassembly
H0006338biological_processchromatin remodeling
H0006355biological_processregulation of DNA-templated transcription
H0006368biological_processtranscription elongation by RNA polymerase II
H0008270molecular_functionzinc ion binding
H0016514cellular_componentSWI/SNF complex
H0016586cellular_componentRSC-type complex
H0042393molecular_functionhistone binding
H0045893biological_processpositive regulation of DNA-templated transcription
H0046872molecular_functionmetal ion binding
I0000785cellular_componentchromatin
I0005198molecular_functionstructural molecule activity
I0005515molecular_functionprotein binding
I0005634cellular_componentnucleus
I0006325biological_processchromatin organization
I0006337biological_processnucleosome disassembly
I0006338biological_processchromatin remodeling
I0006357biological_processregulation of transcription by RNA polymerase II
I0016514cellular_componentSWI/SNF complex
I0016586cellular_componentRSC-type complex
I0032968biological_processpositive regulation of transcription elongation by RNA polymerase II
J0000775cellular_componentchromosome, centromeric region
J0000785cellular_componentchromatin
J0003677molecular_functionDNA binding
J0004386molecular_functionhelicase activity
J0005515molecular_functionprotein binding
J0005524molecular_functionATP binding
J0005634cellular_componentnucleus
J0006284biological_processbase-excision repair
J0006302biological_processdouble-strand break repair
J0006325biological_processchromatin organization
J0006337biological_processnucleosome disassembly
J0006338biological_processchromatin remodeling
J0006355biological_processregulation of DNA-templated transcription
J0006368biological_processtranscription elongation by RNA polymerase II
J0007010biological_processcytoskeleton organization
J0007059biological_processchromosome segregation
J0008094molecular_functionATP-dependent activity, acting on DNA
J0015616molecular_functionDNA translocase activity
J0016586cellular_componentRSC-type complex
J0016787molecular_functionhydrolase activity
J0016887molecular_functionATP hydrolysis activity
J0031055biological_processchromatin remodeling at centromere
J0042393molecular_functionhistone binding
J0045944biological_processpositive regulation of transcription by RNA polymerase II
J0051321biological_processmeiotic cell cycle
J0070577molecular_functionlysine-acetylated histone binding
J0140658molecular_functionATP-dependent chromatin remodeler activity
K0000785cellular_componentchromatin
K0000978molecular_functionRNA polymerase II cis-regulatory region sequence-specific DNA binding
K0000981molecular_functionDNA-binding transcription factor activity, RNA polymerase II-specific
K0003677molecular_functionDNA binding
K0005515molecular_functionprotein binding
K0005634cellular_componentnucleus
K0006325biological_processchromatin organization
K0006337biological_processnucleosome disassembly
K0006338biological_processchromatin remodeling
K0006355biological_processregulation of DNA-templated transcription
K0006368biological_processtranscription elongation by RNA polymerase II
K0008270molecular_functionzinc ion binding
K0016586cellular_componentRSC-type complex
K0033262biological_processregulation of nuclear cell cycle DNA replication
K0043565molecular_functionsequence-specific DNA binding
K0045944biological_processpositive regulation of transcription by RNA polymerase II
K0046872molecular_functionmetal ion binding
L0000724biological_processdouble-strand break repair via homologous recombination
L0003682molecular_functionchromatin binding
L0005634cellular_componentnucleus
L0006276biological_processplasmid maintenance
L0006303biological_processdouble-strand break repair via nonhomologous end joining
L0006325biological_processchromatin organization
L0006337biological_processnucleosome disassembly
L0006338biological_processchromatin remodeling
L0006366biological_processtranscription by RNA polymerase II
L0006368biological_processtranscription elongation by RNA polymerase II
L0007059biological_processchromosome segregation
L0007062biological_processsister chromatid cohesion
L0016586cellular_componentRSC-type complex
L0030435biological_processsporulation resulting in formation of a cellular spore
L0042173biological_processregulation of sporulation resulting in formation of a cellular spore
L0070914biological_processUV-damage excision repair
M0000785cellular_componentchromatin
M0003677molecular_functionDNA binding
M0005634cellular_componentnucleus
M0006325biological_processchromatin organization
M0006337biological_processnucleosome disassembly
M0006338biological_processchromatin remodeling
M0006355biological_processregulation of DNA-templated transcription
M0006357biological_processregulation of transcription by RNA polymerase II
M0006368biological_processtranscription elongation by RNA polymerase II
M0009303biological_processrRNA transcription
M0016586cellular_componentRSC-type complex
N0000786cellular_componentnucleosome
N0003677molecular_functionDNA binding
N0005515molecular_functionprotein binding
N0005634cellular_componentnucleus
N0005654cellular_componentnucleoplasm
N0005694cellular_componentchromosome
N0030527molecular_functionstructural constituent of chromatin
N0046982molecular_functionprotein heterodimerization activity
O0000786cellular_componentnucleosome
O0003677molecular_functionDNA binding
O0005634cellular_componentnucleus
O0005694cellular_componentchromosome
O0030527molecular_functionstructural constituent of chromatin
O0046982molecular_functionprotein heterodimerization activity
P0000786cellular_componentnucleosome
P0003677molecular_functionDNA binding
P0005515molecular_functionprotein binding
P0005634cellular_componentnucleus
P0005694cellular_componentchromosome
P0030527molecular_functionstructural constituent of chromatin
P0046982molecular_functionprotein heterodimerization activity
Q0000786cellular_componentnucleosome
Q0003677molecular_functionDNA binding
Q0005515molecular_functionprotein binding
Q0005634cellular_componentnucleus
Q0005654cellular_componentnucleoplasm
Q0005694cellular_componentchromosome
Q0030527molecular_functionstructural constituent of chromatin
Q0046982molecular_functionprotein heterodimerization activity
R0000786cellular_componentnucleosome
R0003677molecular_functionDNA binding
R0005515molecular_functionprotein binding
R0005634cellular_componentnucleus
R0005694cellular_componentchromosome
R0006334biological_processnucleosome assembly
R0030527molecular_functionstructural constituent of chromatin
R0046982molecular_functionprotein heterodimerization activity
S0000786cellular_componentnucleosome
S0003677molecular_functionDNA binding
S0005634cellular_componentnucleus
S0005694cellular_componentchromosome
S0030527molecular_functionstructural constituent of chromatin
S0046982molecular_functionprotein heterodimerization activity
T0000786cellular_componentnucleosome
T0003677molecular_functionDNA binding
T0005515molecular_functionprotein binding
T0005634cellular_componentnucleus
T0005694cellular_componentchromosome
T0030527molecular_functionstructural constituent of chromatin
T0046982molecular_functionprotein heterodimerization activity
V0000775cellular_componentchromosome, centromeric region
V0000785cellular_componentchromatin
V0003677molecular_functionDNA binding
V0004386molecular_functionhelicase activity
V0005515molecular_functionprotein binding
V0005524molecular_functionATP binding
V0005634cellular_componentnucleus
V0006284biological_processbase-excision repair
V0006302biological_processdouble-strand break repair
V0006325biological_processchromatin organization
V0006337biological_processnucleosome disassembly
V0006338biological_processchromatin remodeling
V0006355biological_processregulation of DNA-templated transcription
V0006368biological_processtranscription elongation by RNA polymerase II
V0007010biological_processcytoskeleton organization
V0007059biological_processchromosome segregation
V0008094molecular_functionATP-dependent activity, acting on DNA
V0015616molecular_functionDNA translocase activity
V0016586cellular_componentRSC-type complex
V0016787molecular_functionhydrolase activity
V0016887molecular_functionATP hydrolysis activity
V0031055biological_processchromatin remodeling at centromere
V0042393molecular_functionhistone binding
V0045944biological_processpositive regulation of transcription by RNA polymerase II
V0051321biological_processmeiotic cell cycle
V0070577molecular_functionlysine-acetylated histone binding
V0140658molecular_functionATP-dependent chromatin remodeler activity
X0000785cellular_componentchromatin
X0003682molecular_functionchromatin binding
X0005515molecular_functionprotein binding
X0005634cellular_componentnucleus
X0006325biological_processchromatin organization
X0006337biological_processnucleosome disassembly
X0006338biological_processchromatin remodeling
X0006366biological_processtranscription by RNA polymerase II
X0006368biological_processtranscription elongation by RNA polymerase II
X0016586cellular_componentRSC-type complex
X0070577molecular_functionlysine-acetylated histone binding
Y0000775cellular_componentchromosome, centromeric region
Y0000785cellular_componentchromatin
Y0003677molecular_functionDNA binding
Y0004386molecular_functionhelicase activity
Y0005515molecular_functionprotein binding
Y0005524molecular_functionATP binding
Y0005634cellular_componentnucleus
Y0006284biological_processbase-excision repair
Y0006302biological_processdouble-strand break repair
Y0006325biological_processchromatin organization
Y0006337biological_processnucleosome disassembly
Y0006338biological_processchromatin remodeling
Y0006355biological_processregulation of DNA-templated transcription
Y0006368biological_processtranscription elongation by RNA polymerase II
Y0007010biological_processcytoskeleton organization
Y0007059biological_processchromosome segregation
Y0008094molecular_functionATP-dependent activity, acting on DNA
Y0015616molecular_functionDNA translocase activity
Y0016586cellular_componentRSC-type complex
Y0016787molecular_functionhydrolase activity
Y0016887molecular_functionATP hydrolysis activity
Y0031055biological_processchromatin remodeling at centromere
Y0042393molecular_functionhistone binding
Y0045944biological_processpositive regulation of transcription by RNA polymerase II
Y0051321biological_processmeiotic cell cycle
Y0070577molecular_functionlysine-acetylated histone binding
Y0140658molecular_functionATP-dependent chromatin remodeler activity
f0000785cellular_componentchromatin
f0003674molecular_functionmolecular_function
f0003682molecular_functionchromatin binding
f0005198molecular_functionstructural molecule activity
f0005515molecular_functionprotein binding
f0005634cellular_componentnucleus
f0006325biological_processchromatin organization
f0006337biological_processnucleosome disassembly
f0006338biological_processchromatin remodeling
f0006355biological_processregulation of DNA-templated transcription
f0006357biological_processregulation of transcription by RNA polymerase II
f0006368biological_processtranscription elongation by RNA polymerase II
f0016514cellular_componentSWI/SNF complex
f0016586cellular_componentRSC-type complex
f0035267cellular_componentNuA4 histone acetyltransferase complex
f0043232cellular_componentintracellular non-membrane-bounded organelle
f0045944biological_processpositive regulation of transcription by RNA polymerase II
g0000785cellular_componentchromatin
g0005198molecular_functionstructural molecule activity
g0005515molecular_functionprotein binding
g0005634cellular_componentnucleus
g0006325biological_processchromatin organization
g0006337biological_processnucleosome disassembly
g0006338biological_processchromatin remodeling
g0006355biological_processregulation of DNA-templated transcription
g0006357biological_processregulation of transcription by RNA polymerase II
g0006368biological_processtranscription elongation by RNA polymerase II
g0016514cellular_componentSWI/SNF complex
g0016586cellular_componentRSC-type complex
g0043232cellular_componentintracellular non-membrane-bounded organelle
g0045944biological_processpositive regulation of transcription by RNA polymerase II
h0000785cellular_componentchromatin
h0005515molecular_functionprotein binding
h0005634cellular_componentnucleus
h0006337biological_processnucleosome disassembly
h0006338biological_processchromatin remodeling
h0006357biological_processregulation of transcription by RNA polymerase II
h0006368biological_processtranscription elongation by RNA polymerase II
h0007059biological_processchromosome segregation
h0015616molecular_functionDNA translocase activity
h0016514cellular_componentSWI/SNF complex
h0016586cellular_componentRSC-type complex
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue ZN H 1001
ChainResidue
HCYS260
HCYS263
HASN265
HCYS283
HCYS286

Functional Information from PROSITE/UniProt
site_idPS00046
Number of Residues7
DetailsHISTONE_H2A Histone H2A signature. AGLqFPV
ChainResidueDetails
OALA21-VAL27

site_idPS00047
Number of Residues5
DetailsHISTONE_H4 Histone H4 signature. GAKRH
ChainResidueDetails
BGLY14-HIS18

site_idPS00322
Number of Residues7
DetailsHISTONE_H3_1 Histone H3 signature 1. KAPRKQL
ChainResidueDetails
NLYS14-LEU20

site_idPS00357
Number of Residues23
DetailsHISTONE_H2B Histone H2B signature. REIQTavRlLLpGELaKHAVSEG
ChainResidueDetails
PARG92-GLY114

site_idPS00463
Number of Residues30
DetailsZN2_CY6_FUNGAL_1 Zn(2)-C6 fungal-type DNA-binding domain signature. ACvqCRkrKigCdrvkpi......CgnCmkhnkmd.C
ChainResidueDetails
KALA13-CYS42
CALA14-CYS43

site_idPS00633
Number of Residues57
DetailsBROMODOMAIN_1 Bromodomain signature. FkdFiklpSrkfhp..QYYykIqqpMsineIksrdye....YedgpsnflldvelLtkNCqaY
ChainResidueDetails
XPHE77-TYR133
XSER210-PHE267
VTHR1275-TYR1332
LSER40-TYR95

site_idPS00959
Number of Residues9
DetailsHISTONE_H3_2 Histone H3 signature 2. PFqRLVREI
ChainResidueDetails
NPRO66-ILE74

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues8
DetailsMOD_RES: N6-acetyllysine => ECO:0000250|UniProtKB:P0C1H4
ChainResidueDetails
PLYS5
PLYS12
PLYS15
PLYS20
TLYS5
TLYS12
TLYS15
TLYS20

site_idSWS_FT_FI2
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0000269|PubMed:12757711
ChainResidueDetails
PSER14
TSER14
YSER38
HCYS286
DCYS260
DCYS263
DCYS283
DCYS286

site_idSWS_FT_FI3
Number of Residues2
DetailsCARBOHYD: O-linked (GlcNAc) serine => ECO:0000250|UniProtKB:P62807
ChainResidueDetails
PSER112
TSER112
SLYS9
SLYS95

site_idSWS_FT_FI4
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250|UniProtKB:P0C1H4
ChainResidueDetails
PLYS120
SLYS36
TLYS120

site_idSWS_FT_FI5
Number of Residues4
DetailsMOD_RES: N6-(2-hydroxyisobutyryl)lysine => ECO:0000250|UniProtKB:P0C0S8
ChainResidueDetails
OLYS74
OLYS75
SLYS74
SLYS75
RLYS8
RLYS16
RLYS44
RLYS79

site_idSWS_FT_FI6
Number of Residues2
DetailsMOD_RES: N5-methylglutamine => ECO:0000250
ChainResidueDetails
OGLN104
SGLN104
RLYS12
RLYS20

site_idSWS_FT_FI7
Number of Residues2
DetailsMOD_RES: N6-glutaryllysine; alternate => ECO:0000250|UniProtKB:P0C0S8
ChainResidueDetails
OLYS118
SLYS118
RLYS31
RLYS91

site_idSWS_FT_FI8
Number of Residues8
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000250
ChainResidueDetails
OLYS13
RSER47
OLYS15
OLYS119
SLYS13
SLYS15
SLYS119

site_idSWS_FT_FI9
Number of Residues4
DetailsMOD_RES: Phosphotyrosine => ECO:0000250|UniProtKB:P62805
ChainResidueDetails
BTYR51
BTYR88
RTYR51
RTYR88

site_idSWS_FT_FI10
Number of Residues2
DetailsMOD_RES: N6-glutaryllysine; alternate => ECO:0000250|UniProtKB:P62805
ChainResidueDetails
BLYS59
QLYS64
RLYS59
NLYS27
NLYS36
NLYS64
QLYS18
QLYS23
QLYS27
QLYS36

site_idSWS_FT_FI11
Number of Residues2
DetailsMOD_RES: N6-succinyllysine => ECO:0000250|UniProtKB:P62805
ChainResidueDetails
BLYS77
RLYS77

site_idSWS_FT_FI12
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in UFM1); alternate => ECO:0000250|UniProtKB:P62805
ChainResidueDetails
BLYS31
RLYS31

site_idSWS_FT_FI13
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin); alternate => ECO:0000250|UniProtKB:P62805
ChainResidueDetails
NLYS37
BLYS91
RLYS91

site_idSWS_FT_FI14
Number of Residues2
DetailsMOD_RES: Phosphotyrosine => ECO:0000250|UniProtKB:Q71DI3
ChainResidueDetails
NTYR41
QTYR41

site_idSWS_FT_FI15
Number of Residues4
DetailsMOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:P84228
ChainResidueDetails
NLYS56
NLYS79
QLYS56
QLYS79

site_idSWS_FT_FI16
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:Q71DI3
ChainResidueDetails
NSER57
QSER57

site_idSWS_FT_FI17
Number of Residues4
DetailsMOD_RES: Phosphothreonine => ECO:0000250|UniProtKB:Q71DI3
ChainResidueDetails
NTHR80
NTHR107
QTHR80
QTHR107

site_idSWS_FT_FI18
Number of Residues2
DetailsMOD_RES: Phosphoserine => ECO:0000250|UniProtKB:P84243
ChainResidueDetails
NSER86
QSER86

site_idSWS_FT_FI19
Number of Residues2
DetailsMOD_RES: N6-glutaryllysine; alternate => ECO:0000250|UniProtKB:Q71DI3
ChainResidueDetails
NLYS115
QLYS115

site_idSWS_FT_FI20
Number of Residues2
DetailsMOD_RES: N6-succinyllysine; alternate => ECO:0000250|UniProtKB:Q71DI3
ChainResidueDetails
NLYS122
QLYS122

site_idSWS_FT_FI21
Number of Residues2
DetailsLIPID: S-palmitoyl cysteine => ECO:0000250|UniProtKB:Q71DI3
ChainResidueDetails
NCYS110
QCYS110

220113

PDB entries from 2024-05-22

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