6KNI
Crystal structure of SbnH in complex with the cofactor PLP, a PLP-dependent decarboxylase in Staphyloferrin B biothesynthesis
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0003824 | molecular_function | catalytic activity |
| A | 0006596 | biological_process | polyamine biosynthetic process |
| A | 0008836 | molecular_function | diaminopimelate decarboxylase activity |
| A | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
| A | 0016830 | molecular_function | carbon-carbon lyase activity |
| B | 0003824 | molecular_function | catalytic activity |
| B | 0006596 | biological_process | polyamine biosynthetic process |
| B | 0008836 | molecular_function | diaminopimelate decarboxylase activity |
| B | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
| B | 0016830 | molecular_function | carbon-carbon lyase activity |
| C | 0003824 | molecular_function | catalytic activity |
| C | 0006596 | biological_process | polyamine biosynthetic process |
| C | 0008836 | molecular_function | diaminopimelate decarboxylase activity |
| C | 0009089 | biological_process | lysine biosynthetic process via diaminopimelate |
| C | 0016830 | molecular_function | carbon-carbon lyase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 16 |
| Details | binding site for residue PLP A 501 |
| Chain | Residue |
| A | ALA48 |
| A | TYR373 |
| A | HOH603 |
| A | HOH608 |
| A | HOH621 |
| A | HOH657 |
| A | HOH671 |
| B | CYS344 |
| A | LYS50 |
| A | ARG138 |
| A | HIS187 |
| A | GLY228 |
| A | GLU266 |
| A | CYS267 |
| A | GLY268 |
| A | ARG269 |
| site_id | AC2 |
| Number of Residues | 21 |
| Details | binding site for Di-peptide PLP B 501 and LYS B 50 |
| Chain | Residue |
| A | CYS344 |
| A | LEU383 |
| A | HOH696 |
| B | ALA48 |
| B | MET49 |
| B | ALA51 |
| B | ASN52 |
| B | GLU75 |
| B | HIS187 |
| B | GLY228 |
| B | GLU266 |
| B | CYS267 |
| B | GLY268 |
| B | ARG269 |
| B | TYR373 |
| B | SER376 |
| B | HOH605 |
| B | HOH617 |
| B | HOH628 |
| B | HOH673 |
| B | HOH735 |
| site_id | AC3 |
| Number of Residues | 23 |
| Details | binding site for Di-peptide PLP C 501 and LYS C 50 |
| Chain | Residue |
| C | ALA48 |
| C | MET49 |
| C | ALA51 |
| C | ASN52 |
| C | GLU75 |
| C | ARG138 |
| C | HIS187 |
| C | GLY228 |
| C | GLU266 |
| C | CYS267 |
| C | GLY268 |
| C | ARG269 |
| C | CYS344 |
| C | TYR373 |
| C | SER376 |
| C | PHE382 |
| C | LEU383 |
| C | HOH603 |
| C | HOH604 |
| C | HOH615 |
| C | HOH629 |
| C | HOH695 |
| C | HOH713 |
Functional Information from PROSITE/UniProt
