Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

6KHJ

Supercomplex for electron transfer

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0003954	molecular_function	NADH dehydrogenase activity
A	0009060	biological_process	aerobic respiration
A	0009579	cellular_component	thylakoid
A	0016020	cellular_component	membrane
A	0016655	molecular_function	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
A	0019684	biological_process	photosynthesis, light reaction
A	0031676	cellular_component	plasma membrane-derived thylakoid membrane
A	0042651	cellular_component	thylakoid membrane
A	0048038	molecular_function	quinone binding
B	0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity
B	0009579	cellular_component	thylakoid
B	0016020	cellular_component	membrane
B	0016655	molecular_function	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
B	0019684	biological_process	photosynthesis, light reaction
B	0031676	cellular_component	plasma membrane-derived thylakoid membrane
B	0042651	cellular_component	thylakoid membrane
B	0042773	biological_process	ATP synthesis coupled electron transport
B	0048038	molecular_function	quinone binding
B	1902600	biological_process	proton transmembrane transport
C	0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity
C	0009579	cellular_component	thylakoid
C	0016020	cellular_component	membrane
C	0016651	molecular_function	oxidoreductase activity, acting on NAD(P)H
C	0016655	molecular_function	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
C	0019684	biological_process	photosynthesis, light reaction
C	0030964	cellular_component	NADH dehydrogenase complex
C	0031676	cellular_component	plasma membrane-derived thylakoid membrane
C	0042651	cellular_component	thylakoid membrane
C	0048038	molecular_function	quinone binding
C	1902600	biological_process	proton transmembrane transport
D	0003954	molecular_function	NADH dehydrogenase activity
D	0005515	molecular_function	protein binding
D	0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity
D	0009060	biological_process	aerobic respiration
D	0009579	cellular_component	thylakoid
D	0015990	biological_process	electron transport coupled proton transport
D	0016020	cellular_component	membrane
D	0016655	molecular_function	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
D	0031676	cellular_component	plasma membrane-derived thylakoid membrane
D	0042651	cellular_component	thylakoid membrane
D	0042773	biological_process	ATP synthesis coupled electron transport
D	0045271	cellular_component	respiratory chain complex I
D	0048038	molecular_function	quinone binding
D	0048039	molecular_function	ubiquinone binding
E	0009579	cellular_component	thylakoid
E	0016020	cellular_component	membrane
E	0016651	molecular_function	oxidoreductase activity, acting on NAD(P)H
E	0016655	molecular_function	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
E	0019684	biological_process	photosynthesis, light reaction
E	0030964	cellular_component	NADH dehydrogenase complex
E	0031676	cellular_component	plasma membrane-derived thylakoid membrane
E	0042651	cellular_component	thylakoid membrane
E	0042773	biological_process	ATP synthesis coupled electron transport
E	0048038	molecular_function	quinone binding
F	0003954	molecular_function	NADH dehydrogenase activity
F	0005515	molecular_function	protein binding
F	0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity
F	0015990	biological_process	electron transport coupled proton transport
F	0016020	cellular_component	membrane
F	0042773	biological_process	ATP synthesis coupled electron transport
F	0048038	molecular_function	quinone binding
G	0005886	cellular_component	plasma membrane
G	0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity
G	0048038	molecular_function	quinone binding
G	1902600	biological_process	proton transmembrane transport
H	0009579	cellular_component	thylakoid
H	0016020	cellular_component	membrane
H	0016651	molecular_function	oxidoreductase activity, acting on NAD(P)H
H	0016655	molecular_function	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
H	0019684	biological_process	photosynthesis, light reaction
H	0031676	cellular_component	plasma membrane-derived thylakoid membrane
H	0042651	cellular_component	thylakoid membrane
H	0048038	molecular_function	quinone binding
H	0051287	molecular_function	NAD binding
I	0005506	molecular_function	iron ion binding
I	0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity
I	0009579	cellular_component	thylakoid
I	0016020	cellular_component	membrane
I	0016651	molecular_function	oxidoreductase activity, acting on NAD(P)H
I	0016655	molecular_function	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
I	0019684	biological_process	photosynthesis, light reaction
I	0031676	cellular_component	plasma membrane-derived thylakoid membrane
I	0042651	cellular_component	thylakoid membrane
I	0046872	molecular_function	metal ion binding
I	0048038	molecular_function	quinone binding
I	0051539	molecular_function	4 iron, 4 sulfur cluster binding
I	1902600	biological_process	proton transmembrane transport
J	0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity
J	0009579	cellular_component	thylakoid
J	0016020	cellular_component	membrane
J	0016651	molecular_function	oxidoreductase activity, acting on NAD(P)H
J	0016655	molecular_function	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
J	0019684	biological_process	photosynthesis, light reaction
J	0031676	cellular_component	plasma membrane-derived thylakoid membrane
J	0042651	cellular_component	thylakoid membrane
J	0048038	molecular_function	quinone binding
J	1902600	biological_process	proton transmembrane transport
K	0005506	molecular_function	iron ion binding
K	0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity
K	0009060	biological_process	aerobic respiration
K	0009579	cellular_component	thylakoid
K	0015990	biological_process	electron transport coupled proton transport
K	0016020	cellular_component	membrane
K	0016655	molecular_function	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
K	0019684	biological_process	photosynthesis, light reaction
K	0031676	cellular_component	plasma membrane-derived thylakoid membrane
K	0042651	cellular_component	thylakoid membrane
K	0046872	molecular_function	metal ion binding
K	0048038	molecular_function	quinone binding
K	0051536	molecular_function	iron-sulfur cluster binding
K	0051539	molecular_function	4 iron, 4 sulfur cluster binding
L	0009579	cellular_component	thylakoid
L	0016020	cellular_component	membrane
L	0016655	molecular_function	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
L	0031676	cellular_component	plasma membrane-derived thylakoid membrane
L	0042651	cellular_component	thylakoid membrane
L	0048038	molecular_function	quinone binding
M	0009579	cellular_component	thylakoid
M	0016020	cellular_component	membrane
M	0016655	molecular_function	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
M	0031676	cellular_component	plasma membrane-derived thylakoid membrane
M	0042651	cellular_component	thylakoid membrane
M	0048038	molecular_function	quinone binding
N	0009579	cellular_component	thylakoid
N	0016020	cellular_component	membrane
N	0016655	molecular_function	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
N	0031676	cellular_component	plasma membrane-derived thylakoid membrane
N	0042651	cellular_component	thylakoid membrane
N	0048038	molecular_function	quinone binding
O	0005886	cellular_component	plasma membrane
O	0009579	cellular_component	thylakoid
O	0016020	cellular_component	membrane
O	0016655	molecular_function	oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
O	0031676	cellular_component	plasma membrane-derived thylakoid membrane
O	0042651	cellular_component	thylakoid membrane
O	0048038	molecular_function	quinone binding
P	0016020	cellular_component	membrane
Q	0016020	cellular_component	membrane
S	0009767	biological_process	photosynthetic electron transport chain

Functional Information from PDB Data

site_id	AC1
Number of Residues	16
Details	binding site for residue DGD A 401

Chain	Residue
A	ASP6
A	LEU123
A	LEU124
A	ILE125
A	SER126
A	DGD402
C	TYR21
L	TYR20
A	LEU7
A	GLN8
A	TRP29
A	LEU32
A	PRO33
A	MET36
A	PHE119
A	ASN122

site_id	AC2
Number of Residues	17
Details	binding site for residue DGD A 402

Chain	Residue
A	ILE5
A	ASP6
A	LEU7
A	GLN121
A	ASN122
A	LEU123
A	TRP280
A	LEU286
A	GLN303
A	ILE304
A	PHE306
A	ALA307
A	VAL308
A	DGD401
L	TYR13
L	TYR20
L	PHE53

site_id	AC3
Number of Residues	6
Details	binding site for residue PL9 A 403

Chain	Residue
A	ALA237
H	PRO20
H	SER21
H	GLN128
H	PHE131
K	ASN76

site_id	AC4
Number of Residues	10
Details	binding site for residue SQD B 601

Chain	Residue
B	TYR423
B	LYS430
D	GLN163
D	TYR164
D	TYR172
D	GLY175
D	PRO230
F	GLY617
F	THR620
F	MET621

site_id	AC5
Number of Residues	7
Details	binding site for residue SQD C 201

Chain	Residue
C	PHE14
C	VAL15
C	SER17
C	TYR19
C	GLU20
C	PHE22
G	GLN8

site_id	AC6
Number of Residues	4
Details	binding site for residue LHG C 202

Chain	Residue
C	TRP124
C	ARG125
C	ARG127
I	LHG201

site_id	AC7
Number of Residues	9
Details	binding site for residue LHG D 601

Chain	Residue
B	TYR366
B	PRO370
B	LEU374
D	PRO22
D	LEU111
D	LYS112
D	PRO113
D	ARG114
D	PHE118

site_id	AC8
Number of Residues	5
Details	binding site for residue BCR D 602

Chain	Residue
D	LEU93
D	ILE475
D	LEU484
P	ILE10
P	LEU11

site_id	AC9
Number of Residues	2
Details	binding site for residue LMT D 603

Chain	Residue
D	PHE23
D	ARG114

site_id	AD1
Number of Residues	8
Details	binding site for residue BCR F 701

Chain	Residue
D	TYR291
D	PHE421
F	PHE187
F	PRO245
F	THR297
F	LHG705
Q	PHE31
Q	ILE32

site_id	AD2
Number of Residues	9
Details	binding site for residue LMG F 702

Chain	Residue
D	LYS373
D	PHE376
D	ALA377
F	ALA19
F	PRO119
F	GLY120
F	ARG123
F	TYR127
F	TYR166

site_id	AD3
Number of Residues	7
Details	binding site for residue LHG F 703

Chain	Residue
P	PHE25
D	PHE97
D	PHE465
F	ALA28
F	PHE29
F	GLU31
P	ALA13

site_id	AD4
Number of Residues	15
Details	binding site for residue LMG F 704

Chain	Residue
F	PHE303
F	THR307
F	ILE310
F	THR311
F	PHE444
F	ARG448
F	MET452
F	MET554
F	TYR555
F	PRO562
F	GLN563
F	ALA566
F	LEU572
F	TYR573
F	SER576

site_id	AD5
Number of Residues	13
Details	binding site for residue LHG F 705

Chain	Residue
D	TYR297
D	ILE432
D	SER436
D	ARG439
F	GLN176
F	LYS177
F	VAL180
F	THR181
F	TYR586
F	PHE590
F	ILE591
F	ARG595
F	BCR701

site_id	AD6
Number of Residues	4
Details	binding site for residue LHG F 706

Chain	Residue
F	GLN6
F	TRP9
F	GLN71
F	GLN146

site_id	AD7
Number of Residues	6
Details	binding site for residue LHG I 201

Chain	Residue
A	PHE347
C	TRP124
C	LHG202
I	GLN6
I	TYR10
I	SER17

site_id	AD8
Number of Residues	8
Details	binding site for residue SF4 I 202

Chain	Residue
I	CYS73
I	PRO74
I	CYS103
I	ILE104
I	CYS106
I	ALA107
I	ASN108
I	CYS109

site_id	AD9
Number of Residues	6
Details	binding site for residue SF4 I 203

Chain	Residue
I	CYS63
I	CYS66
I	CYS69
I	CYS113
I	THR115
I	LEU118

site_id	AE1
Number of Residues	10
Details	binding site for residue SF4 K 301

Chain	Residue
H	ARG69
H	ILE154
K	ALA51
K	CYS52
K	CYS53
K	GLY88
K	THR89
K	ALA116
K	CYS117
K	CYS148

site_id	AE2
Number of Residues	12
Details	binding site for residue SQD N 201

Chain	Residue
A	LEU74
K	ASP33
K	TRP37
L	PRO63
L	ILE65
L	ASN66
N	GLY2
N	LEU3
N	PHE29
N	ARG32
N	VAL137
N	VAL138

Functional Information from PROSITE/UniProt

site_id	PS00107
Number of Residues	27
Details	PROTEIN_KINASE_ATP Protein kinases ATP-binding region signature. VGIGLMGITVaYlmylkgtpspq.......AIAK

Chain	Residue	Details
F	VAL541-LYS567

site_id	PS00198
Number of Residues	12
Details	4FE4S_FER_1 4Fe-4S ferredoxin-type iron-sulfur binding region signature. CiACEvCVrVCP

Chain	Residue	Details
I	CYS63-PRO74
I	CYS103-PRO114

site_id	PS00535
Number of Residues	12
Details	COMPLEX1_49K Respiratory chain NADH dehydrogenase 49 Kd subunit signature. LHRGmEKIaEnR

Chain	Residue	Details
H	LEU47-ARG58

site_id	PS00542
Number of Residues	22
Details	COMPLEX1_30K Respiratory chain NADH dehydrogenase 30 Kd subunit signature. EREsyDMFgivyegHpnlKrIL

Chain	Residue	Details
J	GLU121-LEU142

site_id	PS00667
Number of Residues	16
Details	COMPLEX1_ND1_1 Respiratory-chain NADH dehydrogenase subunit 1 signature 1. GILApLaDGLKLIfKE

Chain	Residue	Details
A	GLY72-GLU87

site_id	PS00668
Number of Residues	14
Details	COMPLEX1_ND1_2 Respiratory-chain NADH dehydrogenase subunit 1 signature 2. PFDLPEAEeeLVa.G

Chain	Residue	Details
A	PRO231-GLY244

site_id	PS01036
Number of Residues	15
Details	HSP70_3 Heat shock hsp70 proteins family signature 3. YgLsGGhTQLPaIaQ

Chain	Residue	Details
B	TYR185-GLN199

site_id	PS01150
Number of Residues	17
Details	COMPLEX1_20K Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. GvDKLIPVDVYlPgCPP

Chain	Residue	Details
K	GLY134-PRO150

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	40
Details	TRANSMEM: Helical => ECO:0000255

Chain	Residue	Details
L	LEU8-VAL28
D	ILE314-LEU334
D	GLN335-ASP355
D	LEU387-THR407
D	VAL417-MET437
B	VAL462-PHE482
L	ALA45-ILE65
K	CYS117
K	CYS148
I	CYS103
I	CYS106
I	CYS109
I	CYS113
D	PHE277-TYR297

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)