6KGO
LSD1-S2157 five-membered ring adduct model
Functional Information from GO Data
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 5 |
Details | binding site for residue GOL A 901 |
Chain | Residue |
A | GLU413 |
A | ARG526 |
A | LEU544 |
A | ARG688 |
A | HOH1076 |
site_id | AC2 |
Number of Residues | 6 |
Details | binding site for residue GOL A 902 |
Chain | Residue |
A | TRP751 |
A | ASP754 |
A | ARG310 |
A | ARG312 |
A | SER749 |
A | ARG750 |
site_id | AC3 |
Number of Residues | 4 |
Details | binding site for residue GOL A 903 |
Chain | Residue |
A | LYS277 |
A | GLN298 |
A | ARG608 |
A | HOH1029 |
site_id | AC4 |
Number of Residues | 4 |
Details | binding site for residue GOL A 904 |
Chain | Residue |
A | GLN358 |
A | CYS360 |
A | ASN535 |
A | HOH1152 |
site_id | AC5 |
Number of Residues | 2 |
Details | binding site for residue GOL A 905 |
Chain | Residue |
A | ARG312 |
A | VAL313 |
site_id | AC6 |
Number of Residues | 5 |
Details | binding site for residue GOL A 906 |
Chain | Residue |
A | CYS360 |
A | ASP375 |
A | GLU379 |
A | TRP531 |
A | HOH1003 |
site_id | AC7 |
Number of Residues | 10 |
Details | binding site for residue TLA A 907 |
Chain | Residue |
A | THR230 |
A | PHE231 |
A | HIS250 |
A | HIS253 |
A | GLU257 |
A | LYS271 |
A | ASN717 |
A | HOH1023 |
A | HOH1033 |
A | HOH1039 |
site_id | AC8 |
Number of Residues | 42 |
Details | binding site for residues DJ0 A 908 and FAD A 909 |
Chain | Residue |
A | GLY285 |
A | GLY287 |
A | VAL288 |
A | SER289 |
A | LEU307 |
A | GLU308 |
A | ALA309 |
A | ARG310 |
A | GLY314 |
A | GLY315 |
A | ARG316 |
A | LEU329 |
A | GLY330 |
A | ALA331 |
A | MET332 |
A | VAL333 |
A | THR335 |
A | PHE538 |
A | ALA539 |
A | THR588 |
A | VAL590 |
A | THR624 |
A | LEU625 |
A | PRO626 |
A | VAL637 |
A | LEU659 |
A | TRP751 |
A | TRP756 |
A | TYR761 |
A | GLY800 |
A | GLU801 |
A | ALA809 |
A | THR810 |
A | VAL811 |
A | ALA814 |
A | HOH1011 |
A | HOH1034 |
A | HOH1037 |
A | HOH1071 |
A | HOH1073 |
A | HOH1088 |
A | HOH1122 |
site_id | AC9 |
Number of Residues | 42 |
Details | binding site for residues DJ0 A 908 and FAD A 909 |
Chain | Residue |
A | THR624 |
A | LEU625 |
A | PRO626 |
A | VAL637 |
A | LEU659 |
A | TRP751 |
A | TRP756 |
A | TYR761 |
A | GLY800 |
A | GLU801 |
A | ALA809 |
A | THR810 |
A | VAL811 |
A | ALA814 |
A | HOH1011 |
A | HOH1034 |
A | HOH1037 |
A | HOH1071 |
A | HOH1073 |
A | HOH1088 |
A | HOH1122 |
A | GLY285 |
A | GLY287 |
A | VAL288 |
A | SER289 |
A | LEU307 |
A | GLU308 |
A | ALA309 |
A | ARG310 |
A | GLY314 |
A | GLY315 |
A | ARG316 |
A | LEU329 |
A | GLY330 |
A | ALA331 |
A | MET332 |
A | VAL333 |
A | THR335 |
A | PHE538 |
A | ALA539 |
A | THR588 |
A | VAL590 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 99 |
Details | Domain: {"description":"SWIRM","evidences":[{"source":"PROSITE-ProRule","id":"PRU00247","evidenceCode":"ECO:0000255"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI2 |
Number of Residues | 7 |
Details | Binding site: {"evidences":[{"source":"PubMed","id":"16885027","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"16956976","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"21300290","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"23721412","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"2DW4","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2H94","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2HKO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2IW5","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2V1D","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2X0L","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2XAF","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2XAG","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2XAH","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2XAJ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2XAQ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2XAS","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"2Y48","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3ZMS","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3ZMT","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3ZMU","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3ZMV","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3ZMZ","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3ZN0","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3ZN1","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI3 |
Number of Residues | 3 |
Details | Modified residue: {"description":"N6-acetyllysine","evidences":[{"source":"PubMed","id":"27292636","evidenceCode":"ECO:0000269"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI4 |
Number of Residues | 1 |
Details | Modified residue: {"description":"Phosphoserine","evidences":[{"source":"PubMed","id":"23186163","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI5 |
Number of Residues | 1 |
Details | Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)","evidences":[{"source":"PubMed","id":"28112733","evidenceCode":"ECO:0007744"}]} |
Chain | Residue | Details |
site_id | SWS_FT_FI6 |
Number of Residues | 2 |
Details | Cross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin)","evidences":[{"source":"PubMed","id":"25018020","evidenceCode":"ECO:0000305"}]} |
Chain | Residue | Details |