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6KFQ

Crystal structure of thermophilic rhodopsin from Rubrobacter xylanophilus

Functional Information from GO Data
ChainGOidnamespacecontents
A0005216molecular_functionmonoatomic ion channel activity
A0006811biological_processmonoatomic ion transport
A0007602biological_processphototransduction
A0009881molecular_functionphotoreceptor activity
A0016020cellular_componentmembrane
A0034220biological_processmonoatomic ion transmembrane transport
Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue MPG A 301
ChainResidue
ATRP117
AGLY126
AMPG311

site_idAC2
Number of Residues3
Detailsbinding site for residue MPG A 302
ChainResidue
ATYR143
AMPG312
AMPG314

site_idAC3
Number of Residues3
Detailsbinding site for residue MPG A 303
ChainResidue
ALEU18
AALA128
AMPG315

site_idAC4
Number of Residues7
Detailsbinding site for residue MPG A 304
ChainResidue
AMET1
AILE47
ATHR99
ASER103
AALA106
AMPG314
ASO4318

site_idAC5
Number of Residues4
Detailsbinding site for residue MPG A 306
ChainResidue
ASER56
ALEU200
AMPG316
AHOH405

site_idAC6
Number of Residues1
Detailsbinding site for residue MPG A 307
ChainResidue
ALEU81

site_idAC7
Number of Residues1
Detailsbinding site for residue MPG A 308
ChainResidue
AMPG312

site_idAC8
Number of Residues2
Detailsbinding site for residue MPG A 309
ChainResidue
ALEU170
AVAL173

site_idAC9
Number of Residues1
Detailsbinding site for residue MPG A 310
ChainResidue
AGLY211

site_idAD1
Number of Residues1
Detailsbinding site for residue MPG A 311
ChainResidue
AMPG301

site_idAD2
Number of Residues3
Detailsbinding site for residue MPG A 312
ChainResidue
AILE180
AMPG302
AMPG308

site_idAD3
Number of Residues2
Detailsbinding site for residue MPG A 313
ChainResidue
AILE44
AALA48

site_idAD4
Number of Residues6
Detailsbinding site for residue MPG A 314
ChainResidue
ATRP7
AALA53
ATHR99
AALA106
AMPG302
AMPG304

site_idAD5
Number of Residues1
Detailsbinding site for residue MPG A 315
ChainResidue
AMPG303

site_idAD6
Number of Residues4
Detailsbinding site for residue MPG A 316
ChainResidue
AMET1
ATRP5
ASER195
AMPG306

site_idAD7
Number of Residues12
Detailsbinding site for residue RET A 317
ChainResidue
ATRP75
ATHR79
AMET111
APHE131
ASER134
ATHR135
APHE138
ATRP175
ATYR178
ATRP182
AASP205
ALYS209

site_idAD8
Number of Residues7
Detailsbinding site for residue SO4 A 318
ChainResidue
AARG96
AASN97
ATHR99
APHE100
AARG148
AMPG304
AHOH404

site_idAD9
Number of Residues4
Detailsbinding site for residue SO4 A 319
ChainResidue
AGLY30
ATHR31
AARG32
ATYR33

Functional Information from PROSITE/UniProt
site_idPS00327
Number of Residues12
DetailsBACTERIAL_OPSIN_RET Bacterial rhodopsins retinal binding site. FMVLDLlAKvGF
ChainResidueDetails
APHE201-PHE212

site_idPS00950
Number of Residues13
DetailsBACTERIAL_OPSIN_1 Bacterial rhodopsins signature 1. RYiDWvITTPLLL
ChainResidueDetails
AARG71-LEU83

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PDB entries from 2026-01-28

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