6K79
Glycerol kinase form Thermococcus kodakarensis, complex structure with substrate.
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0004370 | molecular_function | glycerol kinase activity |
A | 0005524 | molecular_function | ATP binding |
A | 0005829 | cellular_component | cytosol |
A | 0005975 | biological_process | carbohydrate metabolic process |
A | 0006071 | biological_process | glycerol metabolic process |
A | 0006072 | biological_process | glycerol-3-phosphate metabolic process |
A | 0016301 | molecular_function | kinase activity |
A | 0016310 | biological_process | phosphorylation |
A | 0016773 | molecular_function | phosphotransferase activity, alcohol group as acceptor |
A | 0019563 | biological_process | glycerol catabolic process |
B | 0004370 | molecular_function | glycerol kinase activity |
B | 0005524 | molecular_function | ATP binding |
B | 0005829 | cellular_component | cytosol |
B | 0005975 | biological_process | carbohydrate metabolic process |
B | 0006071 | biological_process | glycerol metabolic process |
B | 0006072 | biological_process | glycerol-3-phosphate metabolic process |
B | 0016301 | molecular_function | kinase activity |
B | 0016310 | biological_process | phosphorylation |
B | 0016773 | molecular_function | phosphotransferase activity, alcohol group as acceptor |
B | 0019563 | biological_process | glycerol catabolic process |
C | 0004370 | molecular_function | glycerol kinase activity |
C | 0005524 | molecular_function | ATP binding |
C | 0005829 | cellular_component | cytosol |
C | 0005975 | biological_process | carbohydrate metabolic process |
C | 0006071 | biological_process | glycerol metabolic process |
C | 0006072 | biological_process | glycerol-3-phosphate metabolic process |
C | 0016301 | molecular_function | kinase activity |
C | 0016310 | biological_process | phosphorylation |
C | 0016773 | molecular_function | phosphotransferase activity, alcohol group as acceptor |
C | 0019563 | biological_process | glycerol catabolic process |
D | 0004370 | molecular_function | glycerol kinase activity |
D | 0005524 | molecular_function | ATP binding |
D | 0005829 | cellular_component | cytosol |
D | 0005975 | biological_process | carbohydrate metabolic process |
D | 0006071 | biological_process | glycerol metabolic process |
D | 0006072 | biological_process | glycerol-3-phosphate metabolic process |
D | 0016301 | molecular_function | kinase activity |
D | 0016310 | biological_process | phosphorylation |
D | 0016773 | molecular_function | phosphotransferase activity, alcohol group as acceptor |
D | 0019563 | biological_process | glycerol catabolic process |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 5 |
Details | binding site for residue PGE B 501 |
Chain | Residue |
B | TYR132 |
B | PHE264 |
B | SER298 |
B | ILE299 |
B | PHE300 |
site_id | AC2 |
Number of Residues | 6 |
Details | binding site for residue GOL B 502 |
Chain | Residue |
B | ASP239 |
B | PHE264 |
B | ARG82 |
B | GLU83 |
B | TRP101 |
B | TYR132 |
site_id | AC3 |
Number of Residues | 6 |
Details | binding site for residue PGE C 501 |
Chain | Residue |
C | TRP101 |
C | PHE264 |
C | SER298 |
C | ILE299 |
C | PHE300 |
C | HOH656 |
site_id | AC4 |
Number of Residues | 6 |
Details | binding site for residue GOL C 502 |
Chain | Residue |
C | ARG82 |
C | GLU83 |
C | TRP101 |
C | TYR132 |
C | ASP239 |
C | PHE264 |
site_id | AC5 |
Number of Residues | 3 |
Details | binding site for residue PGE D 501 |
Chain | Residue |
D | TRP101 |
D | TYR132 |
D | PHE300 |
site_id | AC6 |
Number of Residues | 7 |
Details | binding site for residue GOL D 502 |
Chain | Residue |
D | GLN81 |
D | ARG82 |
D | GLU83 |
D | TRP101 |
D | TYR132 |
D | ASP239 |
D | PHE264 |
site_id | AC7 |
Number of Residues | 5 |
Details | binding site for residue PGE A 501 |
Chain | Residue |
A | TYR132 |
A | PHE264 |
A | ILE299 |
A | PHE300 |
A | HOH700 |
site_id | AC8 |
Number of Residues | 7 |
Details | binding site for residue GOL A 502 |
Chain | Residue |
A | GLN81 |
A | ARG82 |
A | GLU83 |
A | TRP101 |
A | TYR132 |
A | ASP239 |
A | PHE264 |
Functional Information from PROSITE/UniProt
site_id | PS00445 |
Number of Residues | 21 |
Details | FGGY_KINASES_2 FGGY family of carbohydrate kinases signature 2. GiIIGItrgtgre.HLARATLE |
Chain | Residue | Details |
C | GLY355-GLU375 | |
B | GLY355-GLU375 |
site_id | PS00933 |
Number of Residues | 13 |
Details | FGGY_KINASES_1 FGGY family of carbohydrate kinases signature 1. YfSasKLKWLLDN |
Chain | Residue | Details |
C | TYR132-ASN144 | |
B | TYR132-ASN144 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 42 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_00186 |
Chain | Residue | Details |
C | THR12 | |
C | THR261 | |
C | GLY303 | |
C | GLN307 | |
C | GLY402 | |
C | ASN406 | |
D | THR12 | |
D | THR13 | |
D | SER14 | |
D | ARG16 | |
D | ARG82 | |
C | THR13 | |
D | GLU83 | |
D | TYR132 | |
D | ASP239 | |
D | GLN240 | |
D | THR261 | |
D | GLY303 | |
D | GLN307 | |
D | GLY402 | |
D | ASN406 | |
A | THR12 | |
C | SER14 | |
A | THR13 | |
A | SER14 | |
A | ARG16 | |
A | ARG82 | |
A | GLU83 | |
A | TYR132 | |
A | ASP239 | |
A | GLN240 | |
A | THR261 | |
A | GLY303 | |
C | ARG16 | |
A | GLN307 | |
A | GLY402 | |
A | ASN406 | |
C | ARG82 | |
C | GLU83 | |
C | TYR132 | |
C | ASP239 | |
C | GLN240 |