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6K6S

Structure of RNase J1 from Staphylococcus epidermidis

Functional Information from GO Data
ChainGOidnamespacecontents
A0003723molecular_functionRNA binding
A0004519molecular_functionendonuclease activity
A0004521molecular_functionRNA endonuclease activity
A0004527molecular_functionexonuclease activity
A0004534molecular_function5'-3' RNA exonuclease activity
A0005737cellular_componentcytoplasm
A0006364biological_processrRNA processing
A0006396biological_processRNA processing
A0008270molecular_functionzinc ion binding
A0046872molecular_functionmetal ion binding
B0003723molecular_functionRNA binding
B0004519molecular_functionendonuclease activity
B0004521molecular_functionRNA endonuclease activity
B0004527molecular_functionexonuclease activity
B0004534molecular_function5'-3' RNA exonuclease activity
B0005737cellular_componentcytoplasm
B0006364biological_processrRNA processing
B0006396biological_processRNA processing
B0008270molecular_functionzinc ion binding
B0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue MN A 601
ChainResidue
AASP78
AHIS79
AASP164
AHIS390
AMN602

site_idAC2
Number of Residues5
Detailsbinding site for residue MN A 602
ChainResidue
AMN601
AHIS74
AHIS76
AHIS142
AASP164

site_idAC3
Number of Residues6
Detailsbinding site for residue MN B 601
ChainResidue
BASP78
BHIS79
BASP164
BHIS368
BHIS390
BMN602

site_idAC4
Number of Residues5
Detailsbinding site for residue MN B 602
ChainResidue
BHIS74
BHIS76
BHIS142
BASP164
BMN601

Functional Information from PROSITE/UniProt
site_idPS00018
Number of Residues13
DetailsEF_HAND_1 EF-hand calcium-binding domain. DFNTNKLLSgpDI
ChainResidueDetails
AASP474-ILE486

site_idPS00136
Number of Residues12
DetailsSUBTILASE_ASP Serine proteases, subtilase family, aspartic acid active site. IVIIDAGIkfpD
ChainResidueDetails
AILE33-ASP44

site_idPS01292
Number of Residues29
DetailsUPF0036 Uncharacterized protein family UPF0036 signature. HtSGHGsqgDqqlMlrliqPkyfLPiHGE
ChainResidueDetails
AHIS364-GLU392

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues16
DetailsBINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01491
ChainResidueDetails
AHIS74
BHIS76
BASP78
BHIS79
BHIS142
BASP164
BHIS364
BHIS390
AHIS76
AASP78
AHIS79
AHIS142
AASP164
AHIS364
AHIS390
BHIS74

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PDB entries from 2024-07-24

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