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6K5Q

Crystal structure of lysozyme complexed with a bioactive compound from Jatropha gossypiifolia

Functional Information from GO Data
ChainGOidnamespacecontents
A0003796molecular_functionlysozyme activity
A0005515molecular_functionprotein binding
A0005576cellular_componentextracellular region
A0005615cellular_componentextracellular space
A0005737cellular_componentcytoplasm
A0005783cellular_componentendoplasmic reticulum
A0016231molecular_functionbeta-N-acetylglucosaminidase activity
A0016798molecular_functionhydrolase activity, acting on glycosyl bonds
A0016998biological_processcell wall macromolecule catabolic process
A0031640biological_processkilling of cells of another organism
A0042742biological_processdefense response to bacterium
A0042802molecular_functionidentical protein binding
A0050829biological_processdefense response to Gram-negative bacterium
A0050830biological_processdefense response to Gram-positive bacterium
A0051672biological_processobsolete catabolism by organism of cell wall peptidoglycan in other organism
Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue ACT A 201
ChainResidue
AHIS15
AASN93
AHOH482

site_idAC2
Number of Residues2
Detailsbinding site for residue GOL A 202
ChainResidue
AALA122
ATRP123

site_idAC3
Number of Residues6
Detailsbinding site for residue NA A 203
ChainResidue
AD2L204
AHOH507
AASN46
ATHR47
AASP48
AGLY126

site_idAC4
Number of Residues21
Detailsbinding site for residue D2L A 204
ChainResidue
AARG21
AGLU35
AASN44
AARG45
AASN46
ATHR47
AASP52
AGLN57
AASN59
ATRP62
ATRP63
AALA107
ATRP108
AVAL109
ANA203
AHOH405
AHOH411
AHOH419
AHOH466
AHOH483
AHOH527

Functional Information from PROSITE/UniProt
site_idPS00128
Number of Residues19
DetailsGLYCOSYL_HYDROL_F22_1 Glycosyl hydrolases family 22 (GH22) domain signature. CnipCsaLlssDItasvnC
ChainResidueDetails
ACYS76-CYS94

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE:
ChainResidueDetails
AGLU35
AASP52

site_idSWS_FT_FI2
Number of Residues1
DetailsBINDING:
ChainResidueDetails
AASP101

Catalytic Information from CSA
site_idMCSA1
Number of Residues6
DetailsM-CSA 203
ChainResidueDetails
AGLU35hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
AASN46
AASP48
ASER50
AASP52covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, polar/non-polar interaction
AASN59

222624

PDB entries from 2024-07-17

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