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6K1B

Crystal structure of EXD2 exonuclease domain soaked in Mn and dGMP

Functional Information from GO Data
ChainGOidnamespacecontents
A0003676molecular_functionnucleic acid binding
A0006139biological_processnucleobase-containing compound metabolic process
A0008408molecular_function3'-5' exonuclease activity
B0003676molecular_functionnucleic acid binding
B0006139biological_processnucleobase-containing compound metabolic process
B0008408molecular_function3'-5' exonuclease activity
Functional Information from PDB Data
site_idAC1
Number of Residues7
Detailsbinding site for residue MN A 301
ChainResidue
AASP108
AGLU110
AMN302
AHOH409
AHOH433
BASP246
BHOH422

site_idAC2
Number of Residues7
Detailsbinding site for residue MN A 302
ChainResidue
AHOH402
AHOH409
AHOH412
AHOH433
AHOH457
AASP108
AMN301

site_idAC3
Number of Residues7
Detailsbinding site for residue MN A 303
ChainResidue
AASP246
AHOH414
BASP108
BGLU110
BMN301
BHOH410
BHOH434

site_idAC4
Number of Residues7
Detailsbinding site for residue MN B 301
ChainResidue
AMN303
BASP108
BHOH408
BHOH410
BHOH433
BHOH434
BHOH444

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"31127291","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6K19","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6K1A","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6K1B","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6K1C","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6K1D","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6K1E","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues4
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"31127291","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6K18","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6K1A","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6K1B","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6K1D","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"6K1E","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

238895

PDB entries from 2025-07-16

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