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6JY1

Crystal Structure of a Group II pyridoxal dependent decarboxylase, LLP-bound form from Methanocaldococcus jannaschii at 1.72 A

Functional Information from GO Data
ChainGOidnamespacecontents
A0004068molecular_functionaspartate 1-decarboxylase activity
A0004837molecular_functiontyrosine decarboxylase activity
A0015937biological_processcoenzyme A biosynthetic process
A0016830molecular_functioncarbon-carbon lyase activity
A0016831molecular_functioncarboxy-lyase activity
A0019752biological_processcarboxylic acid metabolic process
A0030170molecular_functionpyridoxal phosphate binding
A2001120biological_processmethanofuran biosynthetic process
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue SO4 A 401
ChainResidue
AASN316
ALYS379
AARG380
AHOH504
AHOH516

site_idAC2
Number of Residues5
Detailsbinding site for residue SO4 A 402
ChainResidue
AHOH617
ALYS12
AASP164
AASP168
AHOH545

site_idAC3
Number of Residues5
Detailsbinding site for residue SO4 A 403
ChainResidue
AILE333
AGLU334
AHOH530
AHOH558
AHOH639

site_idAC4
Number of Residues3
Detailsbinding site for residue SO4 A 404
ChainResidue
ALYS223
ALYS224
AHOH583

site_idAC5
Number of Residues4
Detailsbinding site for residue SO4 A 405
ChainResidue
ASER10
AGLU11
ATYR169
ATYR300

site_idAC6
Number of Residues4
Detailsbinding site for residue GOL A 406
ChainResidue
AASP260
AGLY262
ATYR263
AGOL408

site_idAC7
Number of Residues6
Detailsbinding site for residue GOL A 407
ChainResidue
ALYS112
ALEU117
ASER118
AASN120
AASP170
AASP172

site_idAC8
Number of Residues9
Detailsbinding site for residue GOL A 408
ChainResidue
AASN200
AILE201
ATYR202
AASP237
AGOL406
AHOH501
AHOH537
AHOH571
AHOH675

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsMOD_RES: N6-(pyridoxal phosphate)lysine => ECO:0000255|HAMAP-Rule:MF_01610, ECO:0000269|Ref.4
ChainResidueDetails
ALLP245

221371

PDB entries from 2024-06-19

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