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6JID

Human MTHFD2 in complex with Compound 1

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0004488molecular_functionmethylenetetrahydrofolate dehydrogenase (NADP+) activity
B0003824molecular_functioncatalytic activity
B0004488molecular_functionmethylenetetrahydrofolate dehydrogenase (NADP+) activity
Functional Information from PDB Data
site_idAC1
Number of Residues10
Detailsbinding site for residue BQC A 401
ChainResidue
ATYR84
AVAL317
AASN87
ALYS88
AGLN132
AILE276
APRO309
AGLY310
AGLY313
APRO314

site_idAC2
Number of Residues6
Detailsbinding site for residue PO4 A 402
ChainResidue
AARG201
AARG233
AHOH502
AHOH510
BASP216
BHIS219

site_idAC3
Number of Residues7
Detailsbinding site for residue GOL A 403
ChainResidue
ASER171
AMET172
ALEU173
ATRP178
AASN323
AILE326
ALEU332

site_idAC4
Number of Residues4
Detailsbinding site for residue GOL B 401
ChainResidue
BLEU167
BASP168
BHIS219
BGLU220

site_idAC5
Number of Residues9
Detailsbinding site for residue BQC B 402
ChainResidue
BTYR84
BASN87
BLYS88
BGLN132
BLEU133
BPRO309
BGLY310
BGLY313
BPRO314

site_idAC6
Number of Residues4
Detailsbinding site for residue PO4 B 403
ChainResidue
AASP216
AHIS219
BARG201
BARG233

site_idAC7
Number of Residues4
Detailsbinding site for residue GOL B 404
ChainResidue
BLYS88
BASP155
BTHR176
BHOH514

Functional Information from PROSITE/UniProt
site_idPS00766
Number of Residues26
DetailsTHF_DHG_CYH_1 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 1. EeELLnlInkLNnDdnvdgLLVQLPL
ChainResidueDetails
AGLU110-LEU135

site_idPS00767
Number of Residues9
DetailsTHF_DHG_CYH_2 Tetrahydrofolate dehydrogenase/cyclohydrolase signature 2. PGGVGPMTV
ChainResidueDetails
APRO309-VAL317

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues20
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"27899380","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues6
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"16100107","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"27899380","evidenceCode":"ECO:0000269"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues2
DetailsModified residue: {"description":"N6-acetyllysine; alternate","evidences":[{"source":"PubMed","id":"19608861","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues4
DetailsCross-link: {"description":"Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2); alternate","evidences":[{"source":"PubMed","id":"28112733","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

247536

PDB entries from 2026-01-14

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