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6JB5

Crystal structure of nanobody D3-L11 mutant Y102A in complex with hen egg-white lysozyme (form II)

Functional Information from GO Data
ChainGOidnamespacecontents
B0003796molecular_functionlysozyme activity
B0003824molecular_functioncatalytic activity
B0005515molecular_functionprotein binding
B0005576cellular_componentextracellular region
B0005615cellular_componentextracellular space
B0005737cellular_componentcytoplasm
B0005783cellular_componentendoplasmic reticulum
B0008152biological_processmetabolic process
B0016231molecular_functionbeta-N-acetylglucosaminidase activity
B0016787molecular_functionhydrolase activity
B0016798molecular_functionhydrolase activity, acting on glycosyl bonds
B0016998biological_processcell wall macromolecule catabolic process
B0031640biological_processkilling of cells of another organism
B0042742biological_processdefense response to bacterium
B0042802molecular_functionidentical protein binding
B0050829biological_processdefense response to Gram-negative bacterium
B0050830biological_processdefense response to Gram-positive bacterium
B0051672biological_processobsolete catabolism by organism of cell wall peptidoglycan in other organism
Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue CL A 201
ChainResidue
AGLN3
BASP87
BILE88

site_idAC2
Number of Residues6
Detailsbinding site for residue CL A 202
ChainResidue
AARG38
AGLN39
AARG45
AILE93
ATHR95
AHOH336

site_idAC3
Number of Residues9
Detailsbinding site for residue GOL B 201
ChainResidue
AALA102
AVAL103
APRO104
AHOH329
BTRP63
BASP101
BASN103
BALA107
BHOH350

site_idAC4
Number of Residues1
Detailsbinding site for residue GOL B 202
ChainResidue
BARG21

site_idAC5
Number of Residues4
Detailsbinding site for residue CL B 203
ChainResidue
BSER24
BGLY26
BGLN121
BHOH439

site_idAC6
Number of Residues2
Detailsbinding site for residue CL B 204
ChainResidue
BTYR23
BHOH369

Functional Information from PROSITE/UniProt
site_idPS00128
Number of Residues19
DetailsGLYCOSYL_HYDROL_F22_1 Glycosyl hydrolases family 22 (GH22) domain signature. CnipCsaLlssDItasvnC
ChainResidueDetails
BCYS76-CYS94

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE:
ChainResidueDetails
BGLU35
BASP52

site_idSWS_FT_FI2
Number of Residues1
DetailsBINDING:
ChainResidueDetails
BASP101

Catalytic Information from CSA
site_idMCSA1
Number of Residues6
DetailsM-CSA 203
ChainResidueDetails
BGLU35hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
BASN46
BASP48
BSER50
BASP52covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, polar/non-polar interaction
BASN59

218853

PDB entries from 2024-04-24

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