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6J6T

Crystal Structure of HDA15 HD domain

Functional Information from GO Data
ChainGOidnamespacecontents
A0000118cellular_componenthistone deacetylase complex
A0004407molecular_functionhistone deacetylase activity
A0006325biological_processchromatin organization
A0016575biological_processhistone deacetylation
B0000118cellular_componenthistone deacetylase complex
B0004407molecular_functionhistone deacetylase activity
B0006325biological_processchromatin organization
B0016575biological_processhistone deacetylation
C0000118cellular_componenthistone deacetylase complex
C0004407molecular_functionhistone deacetylase activity
C0006325biological_processchromatin organization
C0016575biological_processhistone deacetylation
D0000118cellular_componenthistone deacetylase complex
D0004407molecular_functionhistone deacetylase activity
D0006325biological_processchromatin organization
D0016575biological_processhistone deacetylation
Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue ZN A 601
ChainResidue
AASP313
AHIS315
AASP404

site_idAC2
Number of Residues5
Detailsbinding site for residue K A 602
ChainResidue
AASP311
AASP313
AHIS315
ASER334
ALEU335

site_idAC3
Number of Residues6
Detailsbinding site for residue SO4 A 603
ChainResidue
ALYS205
AGLN206
CTHR213
CSER214
CGLU215
ATHR204

site_idAC4
Number of Residues4
Detailsbinding site for residue SO4 A 604
ChainResidue
ATHR213
ASER214
AGLU215
AHOH704

site_idAC5
Number of Residues3
Detailsbinding site for residue ZN B 601
ChainResidue
BASP313
BHIS315
BASP404

site_idAC6
Number of Residues5
Detailsbinding site for residue K B 602
ChainResidue
BASP311
BASP313
BHIS315
BSER334
BLEU335

site_idAC7
Number of Residues3
Detailsbinding site for residue SO4 B 603
ChainResidue
BASN327
BLYS328
BSER329

site_idAC8
Number of Residues4
Detailsbinding site for residue SO4 B 604
ChainResidue
BASN445
BARG447
DSER148
DLYS265

site_idAC9
Number of Residues7
Detailsbinding site for residue SO4 B 605
ChainResidue
AARG157
AARG243
AHOH770
BTHR204
BLYS205
BARG246
BHOH743

site_idAD1
Number of Residues3
Detailsbinding site for residue ZN C 601
ChainResidue
CASP313
CHIS315
CASP404

site_idAD2
Number of Residues5
Detailsbinding site for residue K C 602
ChainResidue
CASP311
CASP313
CHIS315
CSER334
CLEU335

site_idAD3
Number of Residues2
Detailsbinding site for residue SO4 C 603
ChainResidue
CARG179
CHOH709

site_idAD4
Number of Residues3
Detailsbinding site for residue ZN D 601
ChainResidue
DASP313
DHIS315
DASP404

site_idAD5
Number of Residues5
Detailsbinding site for residue K D 602
ChainResidue
DASP311
DASP313
DHIS315
DSER334
DLEU335

site_idAD6
Number of Residues2
Detailsbinding site for residue SO4 D 603
ChainResidue
DARG179
DHOH708

site_idAD7
Number of Residues3
Detailsbinding site for residue SO4 D 604
ChainResidue
DTHR204
DLYS205
DHOH759

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues939
DetailsRegion: {"description":"Histone deacetylase"}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues4
DetailsActive site: {"description":"Proton donor/acceptor","evidences":[{"source":"PubMed","id":"31061103","evidenceCode":"ECO:0000305"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues12
DetailsBinding site: {"evidences":[{"source":"PubMed","id":"32878973","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6J6T","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

site_idSWS_FT_FI4
Number of Residues4
DetailsSite: {"description":"Polarizes the scissile carbonyl of the substrate","evidences":[{"source":"PubMed","id":"32878973","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"6J6T","evidenceCode":"ECO:0007744"}]}
ChainResidueDetails

242842

PDB entries from 2025-10-08

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