6IYW
Crystal sturucture of L,D-transpeptidase LdtMt2 from Mycobacterium tuberculosis in complex with Imipenem adduct
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0016740 | molecular_function | transferase activity |
| B | 0016740 | molecular_function | transferase activity |
| C | 0016740 | molecular_function | transferase activity |
| D | 0016740 | molecular_function | transferase activity |
| E | 0016740 | molecular_function | transferase activity |
| F | 0016740 | molecular_function | transferase activity |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 11 |
| Details | binding site for residue IM2 A 501 |
| Chain | Residue |
| A | MET303 |
| A | HOH740 |
| A | HOH756 |
| A | TYR308 |
| A | TYR318 |
| A | SER331 |
| A | GLY332 |
| A | HIS352 |
| A | GLY353 |
| A | CYS354 |
| A | HOH603 |
| site_id | AC2 |
| Number of Residues | 10 |
| Details | binding site for residue GOL A 502 |
| Chain | Residue |
| A | THR191 |
| A | THR192 |
| A | ASN193 |
| A | ALA221 |
| A | ASP223 |
| A | HIS246 |
| A | HOH607 |
| D | VAL272 |
| D | HOH691 |
| D | HOH728 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | binding site for residue GOL A 503 |
| Chain | Residue |
| A | GLU213 |
| A | HIS214 |
| A | PHE215 |
| A | ILE291 |
| A | HOH612 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | binding site for residue GOL A 504 |
| Chain | Residue |
| A | SER146 |
| A | GLU240 |
| A | HOH602 |
| A | HOH618 |
| A | HOH623 |
| site_id | AC5 |
| Number of Residues | 3 |
| Details | binding site for residue GOL A 505 |
| Chain | Residue |
| A | GLN327 |
| A | TYR330 |
| A | HOH799 |
| site_id | AC6 |
| Number of Residues | 8 |
| Details | binding site for residue GOL A 506 |
| Chain | Residue |
| A | GLU197 |
| A | TRP398 |
| A | ASP399 |
| A | ARG402 |
| A | HOH733 |
| B | LYS262 |
| B | HIS347 |
| B | HOH800 |
| site_id | AC7 |
| Number of Residues | 6 |
| Details | binding site for residue GOL B 502 |
| Chain | Residue |
| B | GLU213 |
| B | HIS214 |
| B | PHE215 |
| B | ILE291 |
| B | HOH797 |
| B | HOH821 |
| site_id | AC8 |
| Number of Residues | 9 |
| Details | binding site for residue GOL B 503 |
| Chain | Residue |
| B | MET157 |
| B | GLU168 |
| B | ALA171 |
| B | TYR330 |
| B | ARG371 |
| B | LEU391 |
| B | HOH619 |
| B | HOH662 |
| B | HOH774 |
| site_id | AC9 |
| Number of Residues | 5 |
| Details | binding site for residue GOL B 504 |
| Chain | Residue |
| B | GLN327 |
| B | TYR330 |
| B | HOH604 |
| B | HOH671 |
| B | HOH764 |
| site_id | AD1 |
| Number of Residues | 6 |
| Details | binding site for residue GOL B 505 |
| Chain | Residue |
| B | SER146 |
| B | GLU240 |
| B | HOH601 |
| B | HOH608 |
| B | HOH638 |
| B | HOH796 |
| site_id | AD2 |
| Number of Residues | 5 |
| Details | binding site for residue GOL B 506 |
| Chain | Residue |
| B | GLN144 |
| B | THR145 |
| B | PHE238 |
| B | HOH617 |
| B | HOH792 |
| site_id | AD3 |
| Number of Residues | 5 |
| Details | binding site for residue GOL B 507 |
| Chain | Residue |
| B | PRO386 |
| B | GLY387 |
| B | ASN395 |
| B | HOH606 |
| B | HOH643 |
| site_id | AD4 |
| Number of Residues | 6 |
| Details | binding site for residue GOL C 502 |
| Chain | Residue |
| C | GLU213 |
| C | HIS214 |
| C | PHE215 |
| C | ILE291 |
| C | HOH679 |
| C | HOH726 |
| site_id | AD5 |
| Number of Residues | 3 |
| Details | binding site for residue GOL C 503 |
| Chain | Residue |
| C | GLU197 |
| C | GLY198 |
| C | TRP210 |
| site_id | AD6 |
| Number of Residues | 5 |
| Details | binding site for residue GOL D 502 |
| Chain | Residue |
| D | GLU213 |
| D | HIS214 |
| D | PHE215 |
| D | ILE291 |
| D | HOH722 |
| site_id | AD7 |
| Number of Residues | 4 |
| Details | binding site for residue GOL E 502 |
| Chain | Residue |
| E | HIS214 |
| E | PHE215 |
| E | ILE291 |
| E | HOH612 |
| site_id | AD8 |
| Number of Residues | 9 |
| Details | binding site for residue GOL E 503 |
| Chain | Residue |
| B | ALA221 |
| B | ASP223 |
| E | VAL272 |
| E | HOH651 |
| E | HOH716 |
| E | HOH740 |
| B | THR191 |
| B | THR192 |
| B | ASN193 |
| site_id | AD9 |
| Number of Residues | 7 |
| Details | binding site for residue GOL E 504 |
| Chain | Residue |
| E | MET157 |
| E | GLU168 |
| E | VAL294 |
| E | ARG371 |
| E | LEU391 |
| E | HOH617 |
| E | HOH660 |
| site_id | AE1 |
| Number of Residues | 5 |
| Details | binding site for residue GOL E 505 |
| Chain | Residue |
| E | THR145 |
| E | SER146 |
| E | SER147 |
| E | HOH601 |
| E | HOH602 |
| site_id | AE2 |
| Number of Residues | 6 |
| Details | binding site for residue GOL E 506 |
| Chain | Residue |
| E | GLY198 |
| E | ALA199 |
| E | TRP210 |
| E | HOH680 |
| F | ASN260 |
| F | ASN379 |
| site_id | AE3 |
| Number of Residues | 7 |
| Details | binding site for residue GOL E 507 |
| Chain | Residue |
| E | ILE190 |
| E | THR191 |
| E | THR192 |
| E | PRO195 |
| E | VAL196 |
| E | GLU197 |
| E | HOH668 |
| site_id | AE4 |
| Number of Residues | 7 |
| Details | binding site for residue GOL F 502 |
| Chain | Residue |
| C | THR191 |
| C | THR192 |
| C | ASN193 |
| C | HIS246 |
| F | VAL272 |
| F | HOH621 |
| F | HOH624 |
| site_id | AE5 |
| Number of Residues | 11 |
| Details | binding site for residue GOL F 503 |
| Chain | Residue |
| F | MET157 |
| F | GLU168 |
| F | ALA171 |
| F | ARG209 |
| F | TYR330 |
| F | ARG371 |
| F | GLY390 |
| F | LEU391 |
| F | HOH603 |
| F | HOH623 |
| F | HOH659 |
| site_id | AE6 |
| Number of Residues | 3 |
| Details | binding site for residue GOL F 504 |
| Chain | Residue |
| F | HIS214 |
| F | PHE215 |
| F | HOH611 |
| site_id | AE7 |
| Number of Residues | 5 |
| Details | binding site for residue GOL F 505 |
| Chain | Residue |
| F | THR384 |
| F | LEU385 |
| F | PRO386 |
| F | GLY387 |
| F | ASN395 |
| site_id | AE8 |
| Number of Residues | 17 |
| Details | binding site for Di-peptide IM2 B 501 and CYS B 354 |
| Chain | Residue |
| B | SER279 |
| B | MET280 |
| B | MET303 |
| B | TYR308 |
| B | TYR318 |
| B | SER331 |
| B | GLY332 |
| B | VAL333 |
| B | PHE334 |
| B | HIS336 |
| B | SER351 |
| B | HIS352 |
| B | GLY353 |
| B | LEU355 |
| B | ASN356 |
| B | HOH698 |
| B | HOH773 |
| site_id | AE9 |
| Number of Residues | 16 |
| Details | binding site for Di-peptide IM2 C 501 and CYS C 354 |
| Chain | Residue |
| C | SER279 |
| C | MET280 |
| C | MET303 |
| C | TYR308 |
| C | TYR318 |
| C | SER331 |
| C | GLY332 |
| C | PHE334 |
| C | HIS336 |
| C | SER351 |
| C | HIS352 |
| C | GLY353 |
| C | LEU355 |
| C | ASN356 |
| C | HOH706 |
| C | HOH723 |
| site_id | AF1 |
| Number of Residues | 15 |
| Details | binding site for Di-peptide IM2 D 501 and CYS D 354 |
| Chain | Residue |
| D | SER279 |
| D | MET280 |
| D | TYR308 |
| D | TYR318 |
| D | SER331 |
| D | GLY332 |
| D | PHE334 |
| D | HIS336 |
| D | SER351 |
| D | HIS352 |
| D | GLY353 |
| D | LEU355 |
| D | ASN356 |
| D | HOH738 |
| D | HOH747 |
| site_id | AF2 |
| Number of Residues | 17 |
| Details | binding site for Di-peptide IM2 E 501 and CYS E 354 |
| Chain | Residue |
| E | SER279 |
| E | MET280 |
| E | TYR308 |
| E | TYR318 |
| E | SER331 |
| E | GLY332 |
| E | PHE334 |
| E | HIS336 |
| E | SER351 |
| E | HIS352 |
| E | GLY353 |
| E | LEU355 |
| E | ASN356 |
| E | HOH623 |
| E | HOH659 |
| E | HOH689 |
| E | HOH712 |
| site_id | AF3 |
| Number of Residues | 17 |
| Details | binding site for Di-peptide IM2 F 501 and CYS F 354 |
| Chain | Residue |
| F | SER279 |
| F | MET280 |
| F | TYR308 |
| F | TYR318 |
| F | SER331 |
| F | GLY332 |
| F | PHE334 |
| F | HIS336 |
| F | SER351 |
| F | HIS352 |
| F | GLY353 |
| F | LEU355 |
| F | ASN356 |
| F | HOH691 |
| F | HOH707 |
| F | HOH776 |
| F | HOH784 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 750 |
| Details | Domain: {"description":"L,D-TPase catalytic","evidences":[{"source":"PROSITE-ProRule","id":"PRU01373","evidenceCode":"ECO:0000255"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 6 |
| Details | Active site: {"description":"Proton donor/acceptor","evidences":[{"source":"PROSITE-ProRule","id":"PRU01373","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"23519417","evidenceCode":"ECO:0000305"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 6 |
| Details | Active site: {"description":"Nucleophile","evidences":[{"source":"PROSITE-ProRule","id":"PRU01373","evidenceCode":"ECO:0000255"},{"source":"PubMed","id":"23519417","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 18 |
| Details | Binding site: {} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI5 |
| Number of Residues | 18 |
| Details | Binding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI6 |
| Number of Residues | 6 |
| Details | Site: {"description":"Binds to carbapenem drug (covalent)"} |
| Chain | Residue | Details |
