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6IX5

The structure of LepI complex with SAM and its substrate analogue

Functional Information from GO Data
ChainGOidnamespacecontents
A0008168molecular_functionmethyltransferase activity
A0008171molecular_functionO-methyltransferase activity
A0009058biological_processbiosynthetic process
A0032259biological_processmethylation
B0008168molecular_functionmethyltransferase activity
B0008171molecular_functionO-methyltransferase activity
B0009058biological_processbiosynthetic process
B0032259biological_processmethylation
Functional Information from PDB Data
site_idAC1
Number of Residues20
Detailsbinding site for residue SAM A 401
ChainResidue
AGLY227
AARG291
ALEU292
AHOH540
AHOH585
AHOH590
AHOH598
AHOH646
AHOH689
AHOH742
AHOH780
AGLY229
AHOH810
AASP252
ALEU253
AVAL256
AHIS274
AASN275
APHE276
AHIS277

site_idAC2
Number of Residues16
Detailsbinding site for residue B0L A 402
ChainResidue
AHIS133
ALEU138
ACYS175
ALEU192
AASP195
AARG295
AASP296
ATHR338
ACYS341
AILE342
AALA345
ALEU346
AEDO411
AHOH576
BPHE41
BMET45

site_idAC3
Number of Residues6
Detailsbinding site for residue EDO A 403
ChainResidue
AGLU90
ALEU91
AARG94
BASP156
BILE157
BMET343

site_idAC4
Number of Residues3
Detailsbinding site for residue EDO A 404
ChainResidue
ALYS209
AARG318
AHOH617

site_idAC5
Number of Residues6
Detailsbinding site for residue EDO A 405
ChainResidue
AASP156
AILE157
AMET343
BGLU90
BLEU91
BARG94

site_idAC6
Number of Residues5
Detailsbinding site for residue EDO A 406
ChainResidue
ASER115
ASER116
AASN117
AGLN120
AHOH700

site_idAC7
Number of Residues5
Detailsbinding site for residue EDO A 407
ChainResidue
ATHR194
AASP195
AGLU196
AHOH543
AHOH640

site_idAC8
Number of Residues5
Detailsbinding site for residue EDO A 408
ChainResidue
APRO183
ATHR184
AHOH501
AHOH504
AHOH871

site_idAC9
Number of Residues4
Detailsbinding site for residue EDO A 409
ChainResidue
AGLY284
APRO311
AALA312
AMET313

site_idAD1
Number of Residues5
Detailsbinding site for residue EDO A 410
ChainResidue
AGLN258
AGLN261
ASER271
AHOH545
AHOH801

site_idAD2
Number of Residues3
Detailsbinding site for residue EDO A 411
ChainResidue
AHIS133
AB0L402
AHOH511

site_idAD3
Number of Residues6
Detailsbinding site for residue CL A 412
ChainResidue
ALYS329
AGLY330
AALA331
BARG97
BGLN107
BHOH614

site_idAD4
Number of Residues6
Detailsbinding site for residue CL A 413
ChainResidue
ATYR241
APRO242
AASN243
AGLN244
BTHR278
BPRO279

site_idAD5
Number of Residues3
Detailsbinding site for residue CL A 415
ChainResidue
ATHR198
AHOH616
AHOH846

site_idAD6
Number of Residues1
Detailsbinding site for residue CL A 416
ChainResidue
AALA144

site_idAD7
Number of Residues6
Detailsbinding site for residue GOL A 417
ChainResidue
BARG23
ASER36
ALEU37
AGLU38
ATHR39
APRO40

site_idAD8
Number of Residues4
Detailsbinding site for residue NA A 418
ChainResidue
APRO298
AASP299
AHOH635
AHOH723

site_idAD9
Number of Residues6
Detailsbinding site for residue IMD A 419
ChainResidue
ALEU202
ASER203
ATHR204
APHE205
ALYS240
ATYR241

site_idAE1
Number of Residues21
Detailsbinding site for residue SAM B 401
ChainResidue
BGLY227
BGLY228
BGLY229
BASP252
BLEU253
BVAL256
BHIS274
BASN275
BPHE276
BHIS277
BARG291
BLEU292
BHOH557
BHOH593
BHOH600
BHOH657
BHOH662
BHOH710
BHOH714
BHOH732
BHOH795

site_idAE2
Number of Residues14
Detailsbinding site for residue B0L B 402
ChainResidue
APHE41
AMET45
BHIS133
BLEU138
BCYS175
BLEU192
BARG295
BASP296
BTHR338
BCYS341
BILE342
BALA345
BLEU346
BHOH675

site_idAE3
Number of Residues3
Detailsbinding site for residue EDO B 403
ChainResidue
BLYS67
BPRO125
BHOH818

site_idAE4
Number of Residues5
Detailsbinding site for residue EDO B 404
ChainResidue
BSER115
BSER116
BASN117
BGLN120
BHOH708

site_idAE5
Number of Residues6
Detailsbinding site for residue EDO B 405
ChainResidue
BILE186
BHOH504
BHOH514
BHOH606
BHOH635
BHOH640

site_idAE6
Number of Residues4
Detailsbinding site for residue EDO B 406
ChainResidue
BTHR374
BTRP375
BPRO376
BVAL377

site_idAE7
Number of Residues6
Detailsbinding site for residue EDO B 407
ChainResidue
BVAL158
BPRO298
BASP299
BGLY347
BLYS349
BHOH690

site_idAE8
Number of Residues3
Detailsbinding site for residue EDO B 408
ChainResidue
BHOH508
BHOH616
BHOH735

site_idAE9
Number of Residues7
Detailsbinding site for residue EDO B 409
ChainResidue
APRO40
BASN117
BGLN120
BTHR121
BHOH539
BHOH545
BHOH568

site_idAF1
Number of Residues1
Detailsbinding site for residue CL B 410
ChainResidue
BPHE205

site_idAF2
Number of Residues1
Detailsbinding site for residue CL B 411
ChainResidue
BARG132

site_idAF3
Number of Residues1
Detailsbinding site for residue CL B 412
ChainResidue
BASP62

site_idAF4
Number of Residues3
Detailsbinding site for residue NA B 413
ChainResidue
BSER77
BALA78
BGLU79

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
APHE135
BPHE135

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:O04385
ChainResidueDetails
AGLY227
AASN275
AARG291
BGLY227
BASN275
BARG291

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU01020
ChainResidueDetails
AASP252
BASP252

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PDB entries from 2024-08-28

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