Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6IP0

Crystal structure of Arabidopsis thaliana JMJ13 catalytic domain in complex with AKG

Functional Information from PDB Data
site_idAC1
Number of Residues12
Detailsbinding site for residue AKG A 601
ChainResidue
ATYR282
ANI602
ASO4615
AHOH703
APHE290
AHIS293
AGLU295
ASER301
AASN303
ALYS311
ATRP313
AHIS388

site_idAC2
Number of Residues5
Detailsbinding site for residue NI A 602
ChainResidue
AHIS293
AGLU295
AHIS388
AAKG601
AHOH703

site_idAC3
Number of Residues4
Detailsbinding site for residue ZN A 603
ChainResidue
ACYS500
ACYS503
ACYS522
AHIS525

site_idAC4
Number of Residues4
Detailsbinding site for residue ZN A 604
ChainResidue
ACYS514
ACYS516
AHIS519
ACYS534

site_idAC5
Number of Residues5
Detailsbinding site for residue SO4 A 605
ChainResidue
ATHR488
ALEU542
AARG543
AASP544
AHOH701

site_idAC6
Number of Residues4
Detailsbinding site for residue SO4 A 606
ChainResidue
APRO426
ALEU427
ALEU428
APRO429

site_idAC7
Number of Residues5
Detailsbinding site for residue SO4 A 607
ChainResidue
ATYR495
APHE511
AASN513
ATYR517
AHOH753

site_idAC8
Number of Residues5
Detailsbinding site for residue SO4 A 608
ChainResidue
AARG188
AALA199
AARG200
ACYS203
ASO4609

site_idAC9
Number of Residues8
Detailsbinding site for residue SO4 A 609
ChainResidue
AARG188
ALYS192
ALYS196
AARG200
ASO4608
ASO4612
ASO4612
AHOH786

site_idAD1
Number of Residues6
Detailsbinding site for residue SO4 A 610
ChainResidue
AARG188
ALYS192
AASN195
AASN195
ALYS196
ALYS196

site_idAD2
Number of Residues3
Detailsbinding site for residue SO4 A 611
ChainResidue
ALYS153
ASER154
AHOH714

site_idAD3
Number of Residues8
Detailsbinding site for residue SO4 A 612
ChainResidue
ALYS192
ALYS192
ALYS196
ALYS196
ATYR517
ATYR517
ASO4609
ASO4609

site_idAD4
Number of Residues2
Detailsbinding site for residue SO4 A 613
ChainResidue
APHE411
AILE414

site_idAD5
Number of Residues6
Detailsbinding site for residue SO4 A 614
ChainResidue
ALYS157
ATHR184
ATHR186
ATYR495
AGLY496
AHOH800

site_idAD6
Number of Residues8
Detailsbinding site for residue SO4 A 615
ChainResidue
ATYR231
AILE283
AGLY284
ASER288
AMET289
ALYS311
ASER392
AAKG601

site_idAD7
Number of Residues3
Detailsbinding site for residue SO4 A 616
ChainResidue
AALA346
APHE347
AARG418

site_idAD8
Number of Residues2
Detailsbinding site for residue SO4 A 617
ChainResidue
AHIS525
AASP526

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues51
DetailsZN_FING: C5HC2 => ECO:0000255
ChainResidueDetails
ACYS500-ALA551

site_idSWS_FT_FI2
Number of Residues3
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000305|PubMed:30899015, ECO:0007744|PDB:6IP0, ECO:0007744|PDB:6IP4
ChainResidueDetails
AHIS293
AGLU295
AHIS388

site_idSWS_FT_FI3
Number of Residues8
DetailsBINDING: BINDING => ECO:0000269|PubMed:30899015, ECO:0007744|PDB:6IP0, ECO:0007744|PDB:6IP4
ChainResidueDetails
ACYS500
ACYS503
ACYS514
ACYS516
AHIS519
ACYS522
AHIS525
ACYS534

site_idSWS_FT_FI4
Number of Residues5
DetailsSITE: Histone H3 binding => ECO:0000269|PubMed:30899015, ECO:0007744|PDB:6IP4
ChainResidueDetails
APHE179
AASP236
ATYR282
AASP296
AASN402

224931

PDB entries from 2024-09-11

PDB statisticsPDBj update infoContact PDBjnumon