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6IOY

Crystal structure of Porphyromonas gingivalis acetate kinase

Functional Information from GO Data
ChainGOidnamespacecontents
A0000166molecular_functionnucleotide binding
A0000287molecular_functionmagnesium ion binding
A0005524molecular_functionATP binding
A0005737cellular_componentcytoplasm
A0006082biological_processorganic acid metabolic process
A0006083biological_processacetate metabolic process
A0006085biological_processacetyl-CoA biosynthetic process
A0008776molecular_functionacetate kinase activity
A0016301molecular_functionkinase activity
A0016310biological_processphosphorylation
A0016740molecular_functiontransferase activity
A0016774molecular_functionphosphotransferase activity, carboxyl group as acceptor
A0046872molecular_functionmetal ion binding
B0000166molecular_functionnucleotide binding
B0000287molecular_functionmagnesium ion binding
B0005524molecular_functionATP binding
B0005737cellular_componentcytoplasm
B0006082biological_processorganic acid metabolic process
B0006083biological_processacetate metabolic process
B0006085biological_processacetyl-CoA biosynthetic process
B0008776molecular_functionacetate kinase activity
B0016301molecular_functionkinase activity
B0016310biological_processphosphorylation
B0016740molecular_functiontransferase activity
B0016774molecular_functionphosphotransferase activity, carboxyl group as acceptor
B0046872molecular_functionmetal ion binding
C0000166molecular_functionnucleotide binding
C0000287molecular_functionmagnesium ion binding
C0005524molecular_functionATP binding
C0005737cellular_componentcytoplasm
C0006082biological_processorganic acid metabolic process
C0006083biological_processacetate metabolic process
C0006085biological_processacetyl-CoA biosynthetic process
C0008776molecular_functionacetate kinase activity
C0016301molecular_functionkinase activity
C0016310biological_processphosphorylation
C0016740molecular_functiontransferase activity
C0016774molecular_functionphosphotransferase activity, carboxyl group as acceptor
C0046872molecular_functionmetal ion binding
D0000166molecular_functionnucleotide binding
D0000287molecular_functionmagnesium ion binding
D0005524molecular_functionATP binding
D0005737cellular_componentcytoplasm
D0006082biological_processorganic acid metabolic process
D0006083biological_processacetate metabolic process
D0006085biological_processacetyl-CoA biosynthetic process
D0008776molecular_functionacetate kinase activity
D0016301molecular_functionkinase activity
D0016310biological_processphosphorylation
D0016740molecular_functiontransferase activity
D0016774molecular_functionphosphotransferase activity, carboxyl group as acceptor
D0046872molecular_functionmetal ion binding
Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue MPD A 501
ChainResidue
APRO118
ALEU119
APRO232

site_idAC2
Number of Residues7
Detailsbinding site for residue SO4 B 401
ChainResidue
BHOH625
APHE349
BARG203
BGLY321
BLYS375
BHOH524
BHOH577

site_idAC3
Number of Residues5
Detailsbinding site for residue SO4 C 401
ChainResidue
CARG203
CLYS375
CHOH506
CHOH608
DPHE349

site_idAC4
Number of Residues9
Detailsbinding site for residue SO4 D 401
ChainResidue
DGLY9
DSER10
DARG91
DHIS123
DHIS180
DGLY212
DARG241
DHOH584
DHOH612

site_idAC5
Number of Residues5
Detailsbinding site for residue SO4 D 402
ChainResidue
DGLY210
DASN211
DGLY331
DHOH514
DHOH612

site_idAC6
Number of Residues5
Detailsbinding site for residue SO4 D 403
ChainResidue
CPHE349
DARG203
DGLY321
DLYS375
DHOH676

site_idAC7
Number of Residues3
Detailsbinding site for residue MPD D 404
ChainResidue
DGLU366
DMET367
DVAL368

Functional Information from PROSITE/UniProt
site_idPS01075
Number of Residues12
DetailsACETATE_KINASE_1 Acetate and butyrate kinases family signature 1. VLvLNcGSSSvK
ChainResidueDetails
AVAL3-LYS14

site_idPS01076
Number of Residues18
DetailsACETATE_KINASE_2 Acetate and butyrate kinases family signature 2. IItaHiGnGaSIaAiknG
ChainResidueDetails
AILE204-GLY221

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsActive site: {"description":"Proton donor/acceptor","evidences":[{"source":"HAMAP-Rule","id":"MF_00020","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues56
DetailsBinding site: {"evidences":[{"source":"HAMAP-Rule","id":"MF_00020","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues8
DetailsSite: {"description":"Transition state stabilizer","evidences":[{"source":"HAMAP-Rule","id":"MF_00020","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

247536

PDB entries from 2026-01-14

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