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6IMR

Crystal structure of PDE4D complexed with a novel inhibitor

Functional Information from GO Data
ChainGOidnamespacecontents
A0004114molecular_function3',5'-cyclic-nucleotide phosphodiesterase activity
A0007165biological_processsignal transduction
A0008081molecular_functionphosphoric diester hydrolase activity
B0004114molecular_function3',5'-cyclic-nucleotide phosphodiesterase activity
B0007165biological_processsignal transduction
B0008081molecular_functionphosphoric diester hydrolase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue ZN A 501
ChainResidue
AHIS164
AHIS200
AASP201
AASP318
AHOH612
AHOH788

site_idAC2
Number of Residues6
Detailsbinding site for residue MG A 502
ChainResidue
AHOH656
AHOH697
AHOH803
AASP201
AHOH612
AHOH648

site_idAC3
Number of Residues13
Detailsbinding site for residue AJX A 503
ChainResidue
ATYR159
AHIS160
AMET273
AHIS276
AASN321
AILE336
APHE340
AMET357
AGLN369
APHE372
AILE376
AHOH630
AHOH690

site_idAC4
Number of Residues6
Detailsbinding site for residue EDO A 504
ChainResidue
ASER208
APHE340
APRO356
AHOH662
AHOH663
AHOH664

site_idAC5
Number of Residues4
Detailsbinding site for residue EDO A 505
ChainResidue
ALYS262
AILE265
AASP266
BHOH637

site_idAC6
Number of Residues5
Detailsbinding site for residue EDO A 506
ChainResidue
ATHR134
ALYS136
AASN251
AGLN256
AHOH653

site_idAC7
Number of Residues5
Detailsbinding site for residue EDO A 507
ChainResidue
ATHR289
ALYS290
ALYS291
ALEU299
AHOH759

site_idAC8
Number of Residues5
Detailsbinding site for residue EDO A 508
ChainResidue
AARG330
AGLU366
ATYR406
AHOH644
BPRO411

site_idAC9
Number of Residues5
Detailsbinding site for residue EDO A 509
ChainResidue
AASP401
AASN402
AHOH615
BARG330
BHOH700

site_idAD1
Number of Residues4
Detailsbinding site for residue EDO A 510
ChainResidue
AASN115
AALA155
AASN162
AILE163

site_idAD2
Number of Residues6
Detailsbinding site for residue ZN B 501
ChainResidue
BHIS164
BHIS200
BASP201
BASP318
BHOH642
BHOH714

site_idAD3
Number of Residues6
Detailsbinding site for residue MG B 502
ChainResidue
BASP201
BHOH633
BHOH636
BHOH642
BHOH670
BHOH728

site_idAD4
Number of Residues13
Detailsbinding site for residue AJX B 503
ChainResidue
BTYR159
BHIS160
BMET273
BHIS276
BASN321
BILE336
BPHE340
BMET357
BGLN369
BPHE372
BILE376
BHOH639
BHOH641

site_idAD5
Number of Residues6
Detailsbinding site for residue EDO B 504
ChainResidue
BSER208
BPHE340
BSER355
BPRO356
BHOH624
BHOH660

site_idAD6
Number of Residues6
Detailsbinding site for residue EDO B 505
ChainResidue
BASN115
BALA155
BASN162
BILE163
BEDO506
BHOH618

site_idAD7
Number of Residues8
Detailsbinding site for residue EDO B 506
ChainResidue
BASN162
BEDO505
BHOH618
BHOH625
BHOH638
BGLU150
BTYR153
BALA155

site_idAD8
Number of Residues3
Detailsbinding site for residue EDO B 507
ChainResidue
BARG330
BGLU366
BHOH613

site_idAD9
Number of Residues1
Detailsbinding site for residue EDO B 508
ChainResidue
BHOH617

site_idAE1
Number of Residues5
Detailsbinding site for residue EDO B 509
ChainResidue
BLEU299
BLEU300
BASP301
BASN302
BASP305

site_idAE2
Number of Residues3
Detailsbinding site for residue EDO B 510
ChainResidue
BLYS262
BASP266
BHOH644

Functional Information from PROSITE/UniProt
site_idPS00126
Number of Residues12
DetailsPDEASE_I_1 3'5'-cyclic nucleotide phosphodiesterase domain signature. HDVdHpGvsNqF
ChainResidueDetails
AHIS200-PHE211

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor => ECO:0000250|UniProtKB:Q07343
ChainResidueDetails
AHIS160
BHIS160

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:14609333, ECO:0000269|PubMed:15260978, ECO:0007744|PDB:1PTW, ECO:0007744|PDB:1TB7
ChainResidueDetails
AHIS160
AASN321
AGLN369
BHIS160
BASN321
BGLN369

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:14609333, ECO:0000269|PubMed:15260978, ECO:0000269|PubMed:15576036, ECO:0000269|PubMed:17582435, ECO:0007744|PDB:1PTW, ECO:0007744|PDB:1TB7, ECO:0007744|PDB:1TBB, ECO:0007744|PDB:1XOM, ECO:0007744|PDB:1XON, ECO:0007744|PDB:1XOQ, ECO:0007744|PDB:2PW3
ChainResidueDetails
AHIS164
BHIS164

site_idSWS_FT_FI4
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:14609333, ECO:0000269|PubMed:15260978, ECO:0000269|PubMed:15576036, ECO:0000269|PubMed:17582435, ECO:0007744|PDB:1PTW, ECO:0007744|PDB:1TB7, ECO:0007744|PDB:1TBB, ECO:0007744|PDB:1XOM, ECO:0007744|PDB:1XON, ECO:0007744|PDB:1XOQ, ECO:0007744|PDB:1XOR, ECO:0007744|PDB:2PW3
ChainResidueDetails
AHIS200
AASP318
BHIS200
BASP318

site_idSWS_FT_FI5
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:14609333, ECO:0007744|PDB:1PTW
ChainResidueDetails
AASP201
APHE372
BASP201
BPHE372

227111

PDB entries from 2024-11-06

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