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6IM6

Crystal structure of PDE4D complexed with a novel inhibitor

Functional Information from GO Data
ChainGOidnamespacecontents
A0004114molecular_function3',5'-cyclic-nucleotide phosphodiesterase activity
A0007165biological_processsignal transduction
A0008081molecular_functionphosphoric diester hydrolase activity
B0004114molecular_function3',5'-cyclic-nucleotide phosphodiesterase activity
B0007165biological_processsignal transduction
B0008081molecular_functionphosphoric diester hydrolase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue ZN A 501
ChainResidue
AHIS164
AHIS200
AASP201
AASP318
AHOH632
AHOH752

site_idAC2
Number of Residues6
Detailsbinding site for residue MG A 502
ChainResidue
AHOH673
AHOH694
AHOH762
AASP201
AHOH632
AHOH664

site_idAC3
Number of Residues5
Detailsbinding site for residue MG A 503
ChainResidue
AHIS154
AASP203
AHOH646
AHOH682
AHOH726

site_idAC4
Number of Residues3
Detailsbinding site for residue MG A 504
ChainResidue
AASP151
ATYR153
AHOH724

site_idAC5
Number of Residues7
Detailsbinding site for residue AH3 A 505
ChainResidue
AHIS160
AASN321
ATHR333
AILE336
AMET357
AGLN369
APHE372

site_idAC6
Number of Residues6
Detailsbinding site for residue EDO A 506
ChainResidue
ASER208
APRO356
ACYS358
AHOH649
AHOH670
AHOH750

site_idAC7
Number of Residues5
Detailsbinding site for residue EDO A 507
ChainResidue
AARG330
AGLU366
ATRP405
ATYR406
AHOH618

site_idAC8
Number of Residues5
Detailsbinding site for residue EDO A 508
ChainResidue
AASP394
AILE395
AEDO509
AHOH616
AHOH742

site_idAC9
Number of Residues6
Detailsbinding site for residue EDO A 509
ChainResidue
ATHR178
AVAL388
AASP391
AALA392
AEDO508
AHOH602

site_idAD1
Number of Residues4
Detailsbinding site for residue EDO A 510
ChainResidue
ALYS262
AILE265
AASP266
AHOH630

site_idAD2
Number of Residues4
Detailsbinding site for residue EDO A 511
ChainResidue
AASP266
ALEU269
ALYS275
AGLN311

site_idAD3
Number of Residues6
Detailsbinding site for residue EDO A 512
ChainResidue
AASN115
AALA155
AASN161
AASN162
AARG335
AHOH712

site_idAD4
Number of Residues5
Detailsbinding site for residue EDO A 513
ChainResidue
APHE107
AGLU111
AILE163
AHOH712
AHOH748

site_idAD5
Number of Residues5
Detailsbinding site for residue EDO A 514
ChainResidue
AHIS105
APRO325
AGLN327
AHOH606
AHOH639

site_idAD6
Number of Residues5
Detailsbinding site for residue EDO A 515
ChainResidue
ATHR134
ALYS136
AASN251
ALEU252
AGLN256

site_idAD7
Number of Residues6
Detailsbinding site for residue ZN B 501
ChainResidue
BHIS164
BHIS200
BASP201
BASP318
BHOH604
BHOH678

site_idAD8
Number of Residues6
Detailsbinding site for residue MG B 502
ChainResidue
BASP201
BHOH604
BHOH621
BHOH637
BHOH661
BHOH696

site_idAD9
Number of Residues7
Detailsbinding site for residue AH3 B 503
ChainResidue
BHIS160
BASN321
BTHR333
BILE336
BMET357
BGLN369
BPHE372

site_idAE1
Number of Residues3
Detailsbinding site for residue EDO B 504
ChainResidue
BHOH636
BLYS262
BASP266

site_idAE2
Number of Residues6
Detailsbinding site for residue EDO B 505
ChainResidue
BSER208
BSER355
BPRO356
BCYS358
BHOH623
BHOH647

site_idAE3
Number of Residues5
Detailsbinding site for residue EDO B 506
ChainResidue
BLEU299
BLEU300
BASP301
BASN302
BASP305

Functional Information from PROSITE/UniProt
site_idPS00126
Number of Residues12
DetailsPDEASE_I_1 3'5'-cyclic nucleotide phosphodiesterase domain signature. HDVdHpGvsNqF
ChainResidueDetails
AHIS200-PHE211

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE: Proton donor => ECO:0000250|UniProtKB:Q07343
ChainResidueDetails
AHIS160
BHIS160

site_idSWS_FT_FI2
Number of Residues6
DetailsBINDING: BINDING => ECO:0000269|PubMed:14609333, ECO:0000269|PubMed:15260978, ECO:0007744|PDB:1PTW, ECO:0007744|PDB:1TB7
ChainResidueDetails
AHIS160
AASN321
AGLN369
BHIS160
BASN321
BGLN369

site_idSWS_FT_FI3
Number of Residues2
DetailsBINDING: BINDING => ECO:0000269|PubMed:14609333, ECO:0000269|PubMed:15260978, ECO:0000269|PubMed:15576036, ECO:0000269|PubMed:17582435, ECO:0007744|PDB:1PTW, ECO:0007744|PDB:1TB7, ECO:0007744|PDB:1TBB, ECO:0007744|PDB:1XOM, ECO:0007744|PDB:1XON, ECO:0007744|PDB:1XOQ, ECO:0007744|PDB:2PW3
ChainResidueDetails
AHIS164
BHIS164

site_idSWS_FT_FI4
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:14609333, ECO:0000269|PubMed:15260978, ECO:0000269|PubMed:15576036, ECO:0000269|PubMed:17582435, ECO:0007744|PDB:1PTW, ECO:0007744|PDB:1TB7, ECO:0007744|PDB:1TBB, ECO:0007744|PDB:1XOM, ECO:0007744|PDB:1XON, ECO:0007744|PDB:1XOQ, ECO:0007744|PDB:1XOR, ECO:0007744|PDB:2PW3
ChainResidueDetails
AHIS200
AASP318
BHIS200
BASP318

site_idSWS_FT_FI5
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:14609333, ECO:0007744|PDB:1PTW
ChainResidueDetails
AASP201
APHE372
BASP201
BPHE372

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PDB entries from 2024-07-10

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