6IHE
Crystal structure of Malate dehydrogenase from Metallosphaera sedula
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000166 | molecular_function | nucleotide binding |
A | 0003824 | molecular_function | catalytic activity |
A | 0004459 | molecular_function | L-lactate dehydrogenase activity |
A | 0006089 | biological_process | lactate metabolic process |
A | 0006090 | biological_process | pyruvate metabolic process |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
A | 0019752 | biological_process | carboxylic acid metabolic process |
B | 0000166 | molecular_function | nucleotide binding |
B | 0003824 | molecular_function | catalytic activity |
B | 0004459 | molecular_function | L-lactate dehydrogenase activity |
B | 0006089 | biological_process | lactate metabolic process |
B | 0006090 | biological_process | pyruvate metabolic process |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0016616 | molecular_function | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
B | 0019752 | biological_process | carboxylic acid metabolic process |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 23 |
Details | binding site for residue NAD A 401 |
Chain | Residue |
A | GLY10 |
A | GLY79 |
A | LYS80 |
A | PRO81 |
A | VAL118 |
A | ASN120 |
A | VAL144 |
A | THR218 |
A | MLT402 |
A | HOH509 |
A | HOH515 |
A | LYS11 |
A | HOH532 |
A | HOH553 |
A | HOH560 |
A | HOH563 |
A | ILE12 |
A | TYR32 |
A | ASP33 |
A | ILE34 |
A | ILE35 |
A | SER77 |
A | ALA78 |
site_id | AC2 |
Number of Residues | 11 |
Details | binding site for residue MLT A 402 |
Chain | Residue |
A | ARG82 |
A | ARG88 |
A | ASN120 |
A | ARG148 |
A | HIS172 |
A | PRO208 |
A | ILE212 |
A | THR218 |
A | NAD401 |
A | HOH509 |
A | HOH560 |
site_id | AC3 |
Number of Residues | 5 |
Details | binding site for residue GOL A 403 |
Chain | Residue |
A | LYS131 |
A | TYR132 |
A | LYS134 |
A | GLU250 |
A | HOH507 |
site_id | AC4 |
Number of Residues | 3 |
Details | binding site for residue PGE A 404 |
Chain | Residue |
A | ASP27 |
A | ASN58 |
A | HOH526 |
site_id | AC5 |
Number of Residues | 6 |
Details | binding site for residue PGE A 405 |
Chain | Residue |
A | PHE167 |
A | THR182 |
A | LEU273 |
A | HOH580 |
B | GLY267 |
B | PRO268 |
site_id | AC6 |
Number of Residues | 5 |
Details | binding site for residue EDO A 406 |
Chain | Residue |
A | SER19 |
A | VAL22 |
A | SER23 |
A | LYS53 |
A | HOH504 |
site_id | AC7 |
Number of Residues | 4 |
Details | binding site for residue PG4 A 407 |
Chain | Residue |
A | ASP72 |
A | GLY112 |
A | HOH568 |
B | LYS186 |
site_id | AC8 |
Number of Residues | 6 |
Details | binding site for residue PG4 A 408 |
Chain | Residue |
A | THR162 |
A | SER163 |
A | LYS186 |
B | ASP72 |
B | GLY112 |
B | PGE405 |
site_id | AC9 |
Number of Residues | 1 |
Details | binding site for residue PEG A 409 |
Chain | Residue |
A | GLU276 |
site_id | AD1 |
Number of Residues | 30 |
Details | binding site for residue NAD B 401 |
Chain | Residue |
B | GLY10 |
B | LYS11 |
B | ILE12 |
B | TYR32 |
B | ASP33 |
B | ILE34 |
B | ILE35 |
B | LEU38 |
B | SER77 |
B | ALA78 |
B | GLY79 |
B | LYS80 |
B | PRO81 |
B | ASN95 |
B | ILE98 |
B | VAL118 |
B | ALA119 |
B | ASN120 |
B | VAL144 |
B | THR218 |
B | PRO222 |
B | MLT402 |
B | HOH502 |
B | HOH503 |
B | HOH515 |
B | HOH530 |
B | HOH534 |
B | HOH538 |
B | HOH571 |
B | HOH578 |
site_id | AD2 |
Number of Residues | 8 |
Details | binding site for residue MLT B 402 |
Chain | Residue |
B | THR218 |
B | NAD401 |
B | HOH502 |
B | ARG82 |
B | ARG88 |
B | ASN120 |
B | ARG148 |
B | ILE212 |
site_id | AD3 |
Number of Residues | 5 |
Details | binding site for residue GOL B 403 |
Chain | Residue |
A | LYS231 |
A | GLU237 |
B | LYS231 |
B | GLU237 |
B | HOH565 |
site_id | AD4 |
Number of Residues | 4 |
Details | binding site for residue PGE B 404 |
Chain | Residue |
A | ASP40 |
A | LYS41 |
A | ILE207 |
B | LYS251 |
site_id | AD5 |
Number of Residues | 8 |
Details | binding site for residue PGE B 405 |
Chain | Residue |
A | LYS186 |
A | GLY187 |
A | PG4408 |
B | GLY112 |
B | PHE136 |
B | SER264 |
B | SER265 |
B | ILE266 |
site_id | AD6 |
Number of Residues | 2 |
Details | binding site for residue PGE B 406 |
Chain | Residue |
B | SER108 |
B | LYS109 |
site_id | AD7 |
Number of Residues | 4 |
Details | binding site for residue EDO B 407 |
Chain | Residue |
B | TRP280 |
B | ASN283 |
B | SER284 |
B | LYS287 |
site_id | AD8 |
Number of Residues | 3 |
Details | binding site for residue EDO B 408 |
Chain | Residue |
B | PHE167 |
B | THR182 |
B | HOH501 |
site_id | AD9 |
Number of Residues | 4 |
Details | binding site for residue EDO B 409 |
Chain | Residue |
B | SER19 |
B | VAL22 |
B | SER23 |
B | LYS53 |
site_id | AE1 |
Number of Residues | 3 |
Details | binding site for residue PEG B 410 |
Chain | Residue |
B | GLU199 |
B | ASP202 |
B | HOH582 |