6ICM
Pseudomonas putida CBB5 NdmA with ferredoxin domain of NdmD
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005737 | cellular_component | cytoplasm |
| A | 0009820 | biological_process | alkaloid metabolic process |
| A | 0009822 | biological_process | alkaloid catabolic process |
| A | 0016491 | molecular_function | oxidoreductase activity |
| A | 0032451 | molecular_function | demethylase activity |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0051537 | molecular_function | 2 iron, 2 sulfur cluster binding |
| A | 0055114 | biological_process | obsolete oxidation-reduction process |
| B | 0005737 | cellular_component | cytoplasm |
| B | 0009820 | biological_process | alkaloid metabolic process |
| B | 0009822 | biological_process | alkaloid catabolic process |
| B | 0016491 | molecular_function | oxidoreductase activity |
| B | 0032451 | molecular_function | demethylase activity |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0051537 | molecular_function | 2 iron, 2 sulfur cluster binding |
| B | 0055114 | biological_process | obsolete oxidation-reduction process |
| C | 0005737 | cellular_component | cytoplasm |
| C | 0009820 | biological_process | alkaloid metabolic process |
| C | 0009822 | biological_process | alkaloid catabolic process |
| C | 0016491 | molecular_function | oxidoreductase activity |
| C | 0032451 | molecular_function | demethylase activity |
| C | 0046872 | molecular_function | metal ion binding |
| C | 0051537 | molecular_function | 2 iron, 2 sulfur cluster binding |
| C | 0055114 | biological_process | obsolete oxidation-reduction process |
| D | 0051536 | molecular_function | iron-sulfur cluster binding |
| D | 0051537 | molecular_function | 2 iron, 2 sulfur cluster binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 6 |
| Details | binding site for residue FES A 400 |
| Chain | Residue |
| A | CYS62 |
| A | HIS64 |
| A | ARG65 |
| A | CYS81 |
| A | HIS84 |
| A | TRP86 |
| site_id | AC2 |
| Number of Residues | 4 |
| Details | binding site for residue FE A 401 |
| Chain | Residue |
| A | HOH501 |
| A | HIS173 |
| A | HIS178 |
| A | ASP289 |
| site_id | AC3 |
| Number of Residues | 6 |
| Details | binding site for residue FES B 400 |
| Chain | Residue |
| B | CYS62 |
| B | HIS64 |
| B | ARG65 |
| B | CYS81 |
| B | HIS84 |
| B | TRP86 |
| site_id | AC4 |
| Number of Residues | 5 |
| Details | binding site for residue FE B 401 |
| Chain | Residue |
| B | ASN167 |
| B | HIS173 |
| B | HIS178 |
| B | ASP289 |
| B | HOH501 |
| site_id | AC5 |
| Number of Residues | 7 |
| Details | binding site for residue FES C 400 |
| Chain | Residue |
| C | CYS62 |
| C | HIS64 |
| C | ARG65 |
| C | CYS81 |
| C | HIS84 |
| C | GLY85 |
| C | TRP86 |
| site_id | AC6 |
| Number of Residues | 5 |
| Details | binding site for residue FE C 401 |
| Chain | Residue |
| C | ASN167 |
| C | HIS173 |
| C | HIS178 |
| C | ASP289 |
| C | HOH501 |
| site_id | AC7 |
| Number of Residues | 8 |
| Details | binding site for residue FES D 601 |
| Chain | Residue |
| D | SER536 |
| D | CYS537 |
| D | GLN539 |
| D | VAL541 |
| D | CYS542 |
| D | GLY543 |
| D | CYS545 |
| D | CYS575 |
| site_id | AC8 |
| Number of Residues | 7 |
| Details | binding site for residue PG4 D 602 |
| Chain | Residue |
| B | LYS319 |
| B | ARG322 |
| D | CYS542 |
| D | GLY543 |
| D | ILE546 |
| D | TYR560 |
| D | GLU565 |
Functional Information from PROSITE/UniProt
| site_id | PS00197 |
| Number of Residues | 9 |
| Details | 2FE2S_FER_1 2Fe-2S ferredoxin-type iron-sulfur binding region signature. CEQGVCGTC |
| Chain | Residue | Details |
| D | CYS537-CYS545 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 4 |
| Details | BINDING: BINDING => ECO:0000250 |
| Chain | Residue | Details |
| D | CYS537 | |
| C | HIS64 | |
| C | CYS81 | |
| C | HIS84 | |
| D | CYS542 | |
| D | CYS545 | |
| D | CYS575 | |
| B | CYS62 | |
| B | HIS64 | |
| B | CYS81 | |
| B | HIS84 | |
| C | CYS62 |
