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6I1D

Structure of the Ysh1-Mpe1 nuclease complex from S.cerevisiae

Functional Information from GO Data
ChainGOidnamespacecontents
B0006397biological_processmRNA processing
B0008270molecular_functionzinc ion binding
B0016567biological_processprotein ubiquitination
B0061630molecular_functionubiquitin protein ligase activity
Functional Information from PDB Data
site_idAC1
Number of Residues6
Detailsbinding site for residue ZN A 501
ChainResidue
AASP72
AHIS73
AASP184
AHIS430
AZN502
AHOH646

site_idAC2
Number of Residues6
Detailsbinding site for residue ZN A 502
ChainResidue
AASP184
AZN501
AHOH646
AHIS68
AHIS70
AHIS163

site_idAC3
Number of Residues7
Detailsbinding site for residue GOL A 503
ChainResidue
ALEU50
ATYR53
AASP54
ATYR79
BPHE9
BSER11
BARG76

Functional Information from PROSITE/UniProt
site_idPS00995
Number of Residues9
DetailsTCP1_3 Chaperonins TCP-1 signature 3. QEnkLGDGT
ChainResidueDetails
BGLN36-THR44

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues1
DetailsActive site: {"description":"Proton donor","evidences":[{"evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

site_idSWS_FT_FI2
Number of Residues7
DetailsBinding site: {"evidences":[{"evidenceCode":"ECO:0000250"}]}
ChainResidueDetails

site_idSWS_FT_FI3
Number of Residues73
DetailsDomain: {"description":"DWNN","evidences":[{"source":"PROSITE-ProRule","id":"PRU00612","evidenceCode":"ECO:0000255"}]}
ChainResidueDetails

246031

PDB entries from 2025-12-10

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