Summary Structural details Experimental details Functional details Sequence Neighbor History Downloads

6HUI

The structure of Dps from Listeria innocua soaked with zinc

Functional Information from GO Data

Chain	GOid	namespace	contents
A	0005737	cellular_component	cytoplasm
A	0006879	biological_process	intracellular iron ion homeostasis
A	0008199	molecular_function	ferric iron binding
A	0016491	molecular_function	oxidoreductase activity
A	0016722	molecular_function	oxidoreductase activity, acting on metal ions
A	0046872	molecular_function	metal ion binding
B	0005737	cellular_component	cytoplasm
B	0006879	biological_process	intracellular iron ion homeostasis
B	0008199	molecular_function	ferric iron binding
B	0016491	molecular_function	oxidoreductase activity
B	0016722	molecular_function	oxidoreductase activity, acting on metal ions
B	0046872	molecular_function	metal ion binding
C	0005737	cellular_component	cytoplasm
C	0006879	biological_process	intracellular iron ion homeostasis
C	0008199	molecular_function	ferric iron binding
C	0016491	molecular_function	oxidoreductase activity
C	0016722	molecular_function	oxidoreductase activity, acting on metal ions
C	0046872	molecular_function	metal ion binding
D	0005737	cellular_component	cytoplasm
D	0006879	biological_process	intracellular iron ion homeostasis
D	0008199	molecular_function	ferric iron binding
D	0016491	molecular_function	oxidoreductase activity
D	0016722	molecular_function	oxidoreductase activity, acting on metal ions
D	0046872	molecular_function	metal ion binding
E	0005737	cellular_component	cytoplasm
E	0006879	biological_process	intracellular iron ion homeostasis
E	0008199	molecular_function	ferric iron binding
E	0016491	molecular_function	oxidoreductase activity
E	0016722	molecular_function	oxidoreductase activity, acting on metal ions
E	0046872	molecular_function	metal ion binding
F	0005737	cellular_component	cytoplasm
F	0006879	biological_process	intracellular iron ion homeostasis
F	0008199	molecular_function	ferric iron binding
F	0016491	molecular_function	oxidoreductase activity
F	0016722	molecular_function	oxidoreductase activity, acting on metal ions
F	0046872	molecular_function	metal ion binding

Functional Information from PDB Data

site_id	AC1
Number of Residues	3
Details	binding site for residue ZN A 201

Chain	Residue
A	HIS44
A	ZN203
D	GLU63

site_id	AC2
Number of Residues	2
Details	binding site for residue ZN A 202

Chain	Residue
A	HIS29
D	ASP59

site_id	AC3
Number of Residues	5
Details	binding site for residue ZN A 203

Chain	Residue
D	GLU63
A	HIS32
A	ASP48
A	ZN201
D	ASP59

site_id	AC4
Number of Residues	4
Details	binding site for residue ZN A 204

Chain	Residue
A	LYS46
A	LEU50
A	GLU53
A	HIS143

site_id	AC5
Number of Residues	2
Details	binding site for residue ZN A 205

Chain	Residue
A	GLU45
A	ASP49

site_id	AC6
Number of Residues	1
Details	binding site for residue ZN A 206

Chain	Residue
A	HIS16

site_id	AC7
Number of Residues	2
Details	binding site for residue ZN A 207

Chain	Residue
A	ZN211
E	HIS38

site_id	AC8
Number of Residues	3
Details	binding site for residue ZN A 208

Chain	Residue
D	GLU81
E	HIS38
F	ASP97

site_id	AC9
Number of Residues	2
Details	binding site for residue ZN A 209

Chain	Residue
A	HIS38
E	ASP97

site_id	AD1
Number of Residues	1
Details	binding site for residue ZN A 210

Chain	Residue
F	HIS38

site_id	AD2
Number of Residues	2
Details	binding site for residue ZN A 211

Chain	Residue
A	HIS38
A	ZN207

site_id	AD3
Number of Residues	2
Details	binding site for residue ZN A 212

Chain	Residue
A	ASP97
F	HIS38

site_id	AD4
Number of Residues	3
Details	binding site for residue ZN A 213

Chain	Residue
A	HIS16
A	SER84
A	GLU113

site_id	AD5
Number of Residues	2
Details	binding site for residue ZN A 214

Chain	Residue
A	GLU119
C	GLU101

site_id	AD6
Number of Residues	5
Details	binding site for residue ZN A 215

Chain	Residue
A	ASP59
A	GLU63
A	ZN216
D	HIS32
D	ASP48

site_id	AD7
Number of Residues	4
Details	binding site for residue ZN A 216

Chain	Residue
A	GLU63
A	ZN215
D	HIS32
D	HIS44

site_id	AD8
Number of Residues	2
Details	binding site for residue ZN A 217

Chain	Residue
A	ASP59
D	HIS29

site_id	AD9
Number of Residues	4
Details	binding site for residue ZN B 201

Chain	Residue
B	HIS32
B	HIS44
B	ZN202
E	GLU63

site_id	AE1
Number of Residues	5
Details	binding site for residue ZN B 202

Chain	Residue
B	HIS32
B	ASP48
B	ZN201
E	ASP59
E	GLU63

site_id	AE2
Number of Residues	3
Details	binding site for residue ZN B 203

Chain	Residue
B	GLU63
B	ZN204
E	HIS44

site_id	AE3
Number of Residues	5
Details	binding site for residue ZN B 204

Chain	Residue
B	ASP59
B	GLU63
B	ZN203
E	HIS32
E	ASP48

site_id	AE4
Number of Residues	3
Details	binding site for residue ZN B 205

Chain	Residue
B	ASP59
E	HIS29
E	ASP48

site_id	AE5
Number of Residues	3
Details	binding site for residue ZN B 206

Chain	Residue
A	ASP131
B	ASP131
F	ASP131

site_id	AE6
Number of Residues	1
Details	binding site for residue ZN B 208

Chain	Residue
B	ASP127

site_id	AE7
Number of Residues	2
Details	binding site for residue ZN B 209

Chain	Residue
B	ASP97
D	HIS38

site_id	AE8
Number of Residues	2
Details	binding site for residue ZN B 210

Chain	Residue
B	HIS38
C	ASP97

site_id	AE9
Number of Residues	2
Details	binding site for residue ZN B 211

Chain	Residue
B	HIS38
C	ZN205

site_id	AF1
Number of Residues	2
Details	binding site for residue ZN B 212

Chain	Residue
B	LYS46
B	HIS143

site_id	AF2
Number of Residues	2
Details	binding site for residue ZN B 213

Chain	Residue
B	GLU45
B	ASP49

site_id	AF3
Number of Residues	2
Details	binding site for residue ZN B 214

Chain	Residue
B	HIS29
E	ASP59

site_id	AF4
Number of Residues	3
Details	binding site for residue ZN B 215

Chain	Residue
B	HIS16
B	GLU113
E	ASN6

site_id	AF5
Number of Residues	2
Details	binding site for residue ZN B 216

Chain	Residue
B	HIS16
B	ASN82

site_id	AF6
Number of Residues	3
Details	binding site for residue ZN C 201

Chain	Residue
C	HIS44
C	GLU63
C	ZN202

site_id	AF7
Number of Residues	4
Details	binding site for residue ZN C 202

Chain	Residue
C	HIS32
C	ASP59
C	GLU63
C	ZN201

site_id	AF8
Number of Residues	2
Details	binding site for residue ZN C 203

Chain	Residue
C	HIS29
C	ASP59

site_id	AF9
Number of Residues	3
Details	binding site for residue ZN C 204

Chain	Residue
C	HIS38
D	ASP97
F	LYS123

site_id	AG1
Number of Residues	3
Details	binding site for residue ZN C 205

Chain	Residue
C	HIS38
D	HIS38
B	ZN211

site_id	AG2
Number of Residues	4
Details	binding site for residue ZN C 206

Chain	Residue
C	LYS46
C	LEU50
C	GLU53
C	HIS143

site_id	AG3
Number of Residues	2
Details	binding site for residue ZN C 207

Chain	Residue
C	GLU45
C	ASP49

site_id	AG4
Number of Residues	3
Details	binding site for residue ZN C 208

Chain	Residue
C	HIS16
C	SER84
C	GLU113

site_id	AG5
Number of Residues	6
Details	binding site for residue ZN D 201

Chain	Residue
C	ASP131
D	ASP131
D	ZN210
D	ZN211
D	ZN212
E	ASP131

site_id	AG6
Number of Residues	2
Details	binding site for residue ZN D 203

Chain	Residue
D	ASP127
E	GLU119

site_id	AG7
Number of Residues	3
Details	binding site for residue ZN D 204

Chain	Residue
C	GLU119
C	ASP122
E	ASP127

site_id	AG8
Number of Residues	2
Details	binding site for residue ZN D 205

Chain	Residue
C	ASP127
D	ASP122

site_id	AG9
Number of Residues	2
Details	binding site for residue ZN D 206

Chain	Residue
D	GLU53
D	HIS143

site_id	AH1
Number of Residues	1
Details	binding site for residue ZN D 207

Chain	Residue
D	ASP49

site_id	AH2
Number of Residues	1
Details	binding site for residue ZN D 208

Chain	Residue
D	HIS16

site_id	AH3
Number of Residues	3
Details	binding site for residue ZN D 209

Chain	Residue
D	HIS16
D	SER84
D	GLU113

site_id	AH4
Number of Residues	3
Details	binding site for residue ZN D 210

Chain	Residue
C	ASP131
D	ASP131
D	ZN201

site_id	AH5
Number of Residues	4
Details	binding site for residue ZN D 211

Chain	Residue
C	ASP131
D	ZN201
D	ZN212
E	ASP131

site_id	AH6
Number of Residues	3
Details	binding site for residue ZN D 212

Chain	Residue
D	ZN201
D	ZN211
E	ASP131

site_id	AH7
Number of Residues	3
Details	binding site for residue ZN E 201

Chain	Residue
E	HIS16
E	SER84
E	GLU113

site_id	AH8
Number of Residues	4
Details	binding site for residue ZN E 202

Chain	Residue
E	LYS46
E	LEU50
E	GLU53
E	HIS143

site_id	AH9
Number of Residues	2
Details	binding site for residue ZN E 203

Chain	Residue
E	GLU45
E	ASP49

site_id	AI1
Number of Residues	3
Details	binding site for residue ZN F 201

Chain	Residue
F	HIS44
F	GLU63
F	ZN202

site_id	AI2
Number of Residues	5
Details	binding site for residue ZN F 202

Chain	Residue
F	HIS32
F	ASP48
F	ASP59
F	GLU63
F	ZN201

site_id	AI3
Number of Residues	3
Details	binding site for residue ZN F 203

Chain	Residue
F	HIS29
F	TYR51
F	ASP59

site_id	AI4
Number of Residues	3
Details	binding site for residue ZN F 204

Chain	Residue
F	LEU50
F	GLU53
F	HIS143

site_id	AI5
Number of Residues	2
Details	binding site for residue ZN F 205

Chain	Residue
F	GLU45
F	ASP49

site_id	AI6
Number of Residues	2
Details	binding site for residue ZN F 206

Chain	Residue
F	HIS16
F	ASN82

Functional Information from PROSITE/UniProt

site_id	PS00818
Number of Residues	17
Details	DPS_1 Dps protein family signature 1. HWyMrGhnfftLHekmD

Chain	Residue	Details
A	HIS32-ASP48

site_id	PS00819
Number of Residues	15
Details	DPS_2 Dps protein family signature 2. MDeVAERllaIGgsP

Chain	Residue	Details
A	MET58-PRO72

Functional Information from SwissProt/UniProt

site_id	SWS_FT_FI1
Number of Residues	6
Details	BINDING: BINDING => ECO:0000269\|PubMed:10625425

Chain	Residue	Details
A	HIS32
B	HIS32
C	HIS32
D	HIS32
E	HIS32
F	HIS32

site_id	SWS_FT_FI2
Number of Residues	6
Details	BINDING: in other chain => ECO:0000269\|PubMed:10625425

Chain	Residue	Details
A	ASP59
B	ASP59
C	ASP59
D	ASP59
E	ASP59
F	ASP59

site_id	SWS_FT_FI3
Number of Residues	6
Details	BINDING: BINDING => ECO:0000305\|PubMed:10625425

Chain	Residue	Details
A	GLU63
B	GLU63
C	GLU63
D	GLU63
E	GLU63
F	GLU63

		Sequence (fasta)
		PDBx/mmCIF
		PDBML format (no-atom)
		PDB format (full)
		Validation report (PDF)
		EDMap 2fo-fc (MTZ)