6HU2
Crystal structure of Schistosoma mansoni HDAC8 complexed with a benzohydroxamate inhibitor 11
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0004407 | molecular_function | histone deacetylase activity |
| A | 0005634 | cellular_component | nucleus |
| A | 0006325 | biological_process | chromatin organization |
| A | 0006351 | biological_process | DNA-templated transcription |
| A | 0016787 | molecular_function | hydrolase activity |
| A | 0031507 | biological_process | heterochromatin formation |
| A | 0040029 | biological_process | epigenetic regulation of gene expression |
| A | 0046872 | molecular_function | metal ion binding |
| A | 0141221 | molecular_function | histone deacetylase activity, hydrolytic mechanism |
| B | 0004407 | molecular_function | histone deacetylase activity |
| B | 0005634 | cellular_component | nucleus |
| B | 0006325 | biological_process | chromatin organization |
| B | 0006351 | biological_process | DNA-templated transcription |
| B | 0016787 | molecular_function | hydrolase activity |
| B | 0031507 | biological_process | heterochromatin formation |
| B | 0040029 | biological_process | epigenetic regulation of gene expression |
| B | 0046872 | molecular_function | metal ion binding |
| B | 0141221 | molecular_function | histone deacetylase activity, hydrolytic mechanism |
| C | 0004407 | molecular_function | histone deacetylase activity |
| C | 0005634 | cellular_component | nucleus |
| C | 0006325 | biological_process | chromatin organization |
| C | 0006351 | biological_process | DNA-templated transcription |
| C | 0016787 | molecular_function | hydrolase activity |
| C | 0031507 | biological_process | heterochromatin formation |
| C | 0040029 | biological_process | epigenetic regulation of gene expression |
| C | 0046872 | molecular_function | metal ion binding |
| C | 0141221 | molecular_function | histone deacetylase activity, hydrolytic mechanism |
| D | 0004407 | molecular_function | histone deacetylase activity |
| D | 0005634 | cellular_component | nucleus |
| D | 0006325 | biological_process | chromatin organization |
| D | 0006351 | biological_process | DNA-templated transcription |
| D | 0016787 | molecular_function | hydrolase activity |
| D | 0031507 | biological_process | heterochromatin formation |
| D | 0040029 | biological_process | epigenetic regulation of gene expression |
| D | 0046872 | molecular_function | metal ion binding |
| D | 0141221 | molecular_function | histone deacetylase activity, hydrolytic mechanism |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 4 |
| Details | binding site for residue ZN A 501 |
| Chain | Residue |
| A | ASP186 |
| A | HIS188 |
| A | ASP285 |
| A | T34504 |
| site_id | AC2 |
| Number of Residues | 5 |
| Details | binding site for residue K A 502 |
| Chain | Residue |
| A | ASP184 |
| A | ASP186 |
| A | HIS188 |
| A | SER207 |
| A | VAL208 |
| site_id | AC3 |
| Number of Residues | 5 |
| Details | binding site for residue K A 503 |
| Chain | Residue |
| A | PHE197 |
| A | SER200 |
| A | VAL203 |
| A | SER243 |
| A | HOH701 |
| site_id | AC4 |
| Number of Residues | 12 |
| Details | binding site for residue T34 A 504 |
| Chain | Residue |
| A | LYS20 |
| A | HIS141 |
| A | HIS142 |
| A | ASP186 |
| A | HIS188 |
| A | PHE216 |
| A | ASP285 |
| A | HIS292 |
| A | TYR341 |
| A | ZN501 |
| A | HOH780 |
| B | ASP50 |
| site_id | AC5 |
| Number of Residues | 7 |
| Details | binding site for residue DMF A 505 |
| Chain | Residue |
| A | THR85 |
| A | HOH658 |
| C | TYR35 |
| C | LYS36 |
| C | LYS365 |
| C | MET366 |
| C | THR367 |
| site_id | AC6 |
| Number of Residues | 3 |
| Details | binding site for residue DMF A 506 |
| Chain | Residue |
| A | GLU131 |
| A | LYS330 |
| A | VAL331 |
| site_id | AC7 |
| Number of Residues | 2 |
| Details | binding site for residue DMF A 507 |
| Chain | Residue |
| A | ARG12 |
| A | GLN13 |
| site_id | AC8 |
| Number of Residues | 5 |
| Details | binding site for residue DMF A 508 |
| Chain | Residue |
| A | TYR301 |
| A | ARG352 |
| A | GLU359 |
| A | MET366 |
| A | ILE368 |
| site_id | AC9 |
| Number of Residues | 6 |
| Details | binding site for residue GOL A 509 |
| Chain | Residue |
| A | HIS189 |
| A | GLU194 |
| A | GLY220 |
| A | THR221 |
| A | PHE233 |
| A | LEU234 |
| site_id | AD1 |
| Number of Residues | 4 |
| Details | binding site for residue ZN B 501 |
| Chain | Residue |
| B | ASP186 |
| B | HIS188 |
| B | ASP285 |
| B | T34504 |
| site_id | AD2 |
| Number of Residues | 5 |
| Details | binding site for residue K B 502 |
| Chain | Residue |
| B | ASP184 |
| B | ASP186 |
| B | HIS188 |
| B | SER207 |
| B | VAL208 |
| site_id | AD3 |
| Number of Residues | 5 |
| Details | binding site for residue K B 503 |
| Chain | Residue |
| B | PHE197 |
| B | SER200 |
| B | VAL203 |
| B | SER243 |
| B | HOH738 |
| site_id | AD4 |
| Number of Residues | 12 |
| Details | binding site for residue T34 B 504 |
| Chain | Residue |
| A | ASP50 |
| B | LYS20 |
| B | HIS141 |
| B | HIS142 |
| B | ASP186 |
| B | HIS188 |
| B | PHE216 |
| B | ASP285 |
| B | HIS292 |
| B | TYR341 |
| B | ZN501 |
| B | HOH773 |
| site_id | AD5 |
| Number of Residues | 3 |
| Details | binding site for residue DMF B 505 |
| Chain | Residue |
| B | ASP257 |
| B | ASP402 |
| B | HOH630 |
| site_id | AD6 |
| Number of Residues | 5 |
| Details | binding site for residue DMF B 506 |
| Chain | Residue |
| B | ARG12 |
| B | GLN13 |
| B | TYR377 |
| B | DMF510 |
| B | HOH607 |
| site_id | AD7 |
| Number of Residues | 4 |
| Details | binding site for residue DMF B 507 |
| Chain | Residue |
| B | TYR7 |
| B | MET29 |
| B | ASP30 |
| B | ILE38 |
| site_id | AD8 |
| Number of Residues | 4 |
| Details | binding site for residue DMF B 508 |
| Chain | Residue |
| B | GLU131 |
| B | VAL132 |
| B | LYS330 |
| B | VAL331 |
| site_id | AD9 |
| Number of Residues | 4 |
| Details | binding site for residue DMF B 509 |
| Chain | Residue |
| B | ARG352 |
| B | GLU359 |
| B | MET366 |
| B | ILE368 |
| site_id | AE1 |
| Number of Residues | 3 |
| Details | binding site for residue DMF B 510 |
| Chain | Residue |
| B | SER376 |
| B | TYR377 |
| B | DMF506 |
| site_id | AE2 |
| Number of Residues | 6 |
| Details | binding site for residue GOL B 511 |
| Chain | Residue |
| B | GLU194 |
| B | GLY220 |
| B | THR221 |
| B | PHE233 |
| B | LEU234 |
| B | HIS189 |
| site_id | AE3 |
| Number of Residues | 8 |
| Details | binding site for residue GOL B 512 |
| Chain | Residue |
| B | GLN10 |
| B | TYR11 |
| B | LEU14 |
| B | PRO46 |
| B | GLN48 |
| B | GLN116 |
| B | HOH601 |
| B | HOH603 |
| site_id | AE4 |
| Number of Residues | 4 |
| Details | binding site for residue ZN C 501 |
| Chain | Residue |
| C | ASP186 |
| C | HIS188 |
| C | ASP285 |
| C | T34504 |
| site_id | AE5 |
| Number of Residues | 5 |
| Details | binding site for residue K C 502 |
| Chain | Residue |
| C | ASP184 |
| C | ASP186 |
| C | HIS188 |
| C | SER207 |
| C | VAL208 |
| site_id | AE6 |
| Number of Residues | 5 |
| Details | binding site for residue K C 503 |
| Chain | Residue |
| C | PHE197 |
| C | SER200 |
| C | VAL203 |
| C | SER243 |
| C | HOH727 |
| site_id | AE7 |
| Number of Residues | 13 |
| Details | binding site for residue T34 C 504 |
| Chain | Residue |
| C | LYS20 |
| C | HIS141 |
| C | HIS142 |
| C | GLY150 |
| C | ASP186 |
| C | HIS188 |
| C | PHE216 |
| C | ASP285 |
| C | HIS292 |
| C | TYR341 |
| C | ZN501 |
| C | HOH756 |
| D | ASP50 |
| site_id | AE8 |
| Number of Residues | 4 |
| Details | binding site for residue DMF C 505 |
| Chain | Residue |
| C | TYR7 |
| C | MET29 |
| C | ASP30 |
| C | ASN33 |
| site_id | AE9 |
| Number of Residues | 6 |
| Details | binding site for residue DMF C 506 |
| Chain | Residue |
| C | TYR7 |
| C | ARG43 |
| C | HOH689 |
| D | SER94 |
| D | SER96 |
| D | GLU147 |
| site_id | AF1 |
| Number of Residues | 3 |
| Details | binding site for residue DMF C 507 |
| Chain | Residue |
| C | ALA61 |
| C | HIS162 |
| C | ALA196 |
| site_id | AF2 |
| Number of Residues | 3 |
| Details | binding site for residue DMF C 508 |
| Chain | Residue |
| C | TYR301 |
| C | ARG352 |
| C | GLU359 |
| site_id | AF3 |
| Number of Residues | 4 |
| Details | binding site for residue DMF C 509 |
| Chain | Residue |
| C | ARG12 |
| C | GLN13 |
| C | CYS16 |
| C | TYR377 |
| site_id | AF4 |
| Number of Residues | 2 |
| Details | binding site for residue DMF C 510 |
| Chain | Residue |
| C | ASP402 |
| C | ILE404 |
| site_id | AF5 |
| Number of Residues | 4 |
| Details | binding site for residue DMF C 511 |
| Chain | Residue |
| C | GLU131 |
| C | VAL132 |
| C | LYS330 |
| C | VAL331 |
| site_id | AF6 |
| Number of Residues | 6 |
| Details | binding site for residue GOL C 512 |
| Chain | Residue |
| C | HIS189 |
| C | GLU194 |
| C | GLY220 |
| C | THR221 |
| C | PHE233 |
| C | LEU234 |
| site_id | AF7 |
| Number of Residues | 4 |
| Details | binding site for residue ZN D 501 |
| Chain | Residue |
| D | ASP186 |
| D | HIS188 |
| D | ASP285 |
| D | T34504 |
| site_id | AF8 |
| Number of Residues | 5 |
| Details | binding site for residue K D 502 |
| Chain | Residue |
| D | ASP184 |
| D | ASP186 |
| D | HIS188 |
| D | SER207 |
| D | VAL208 |
| site_id | AF9 |
| Number of Residues | 5 |
| Details | binding site for residue K D 503 |
| Chain | Residue |
| D | PHE197 |
| D | SER200 |
| D | VAL203 |
| D | SER243 |
| D | HOH715 |
| site_id | AG1 |
| Number of Residues | 12 |
| Details | binding site for residue T34 D 504 |
| Chain | Residue |
| C | ASP50 |
| D | LYS20 |
| D | HIS141 |
| D | HIS142 |
| D | GLY150 |
| D | ASP186 |
| D | HIS188 |
| D | PHE216 |
| D | ASP285 |
| D | HIS292 |
| D | TYR341 |
| D | ZN501 |
| site_id | AG2 |
| Number of Residues | 5 |
| Details | binding site for residue DMF D 505 |
| Chain | Residue |
| D | ARG352 |
| D | GLU359 |
| D | MET366 |
| D | ILE368 |
| D | HOH605 |
| site_id | AG3 |
| Number of Residues | 5 |
| Details | binding site for residue DMF D 506 |
| Chain | Residue |
| D | TYR7 |
| D | ARG12 |
| D | MET29 |
| D | ASP30 |
| D | ILE38 |
| site_id | AG4 |
| Number of Residues | 8 |
| Details | binding site for residue GOL D 507 |
| Chain | Residue |
| D | HIS189 |
| D | GLU194 |
| D | GLY220 |
| D | THR221 |
| D | ASN223 |
| D | PHE233 |
| D | LEU234 |
| D | ASN246 |
