6HT8
Crystal structure of Schistosoma mansoni HDAC8 complexed with a benzohydroxamate inhibitor 3
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000122 | biological_process | negative regulation of transcription by RNA polymerase II |
A | 0004407 | molecular_function | histone deacetylase activity |
A | 0005634 | cellular_component | nucleus |
A | 0006338 | biological_process | chromatin remodeling |
A | 0046872 | molecular_function | metal ion binding |
B | 0000122 | biological_process | negative regulation of transcription by RNA polymerase II |
B | 0004407 | molecular_function | histone deacetylase activity |
B | 0005634 | cellular_component | nucleus |
B | 0006338 | biological_process | chromatin remodeling |
B | 0046872 | molecular_function | metal ion binding |
C | 0000122 | biological_process | negative regulation of transcription by RNA polymerase II |
C | 0004407 | molecular_function | histone deacetylase activity |
C | 0005634 | cellular_component | nucleus |
C | 0006338 | biological_process | chromatin remodeling |
C | 0046872 | molecular_function | metal ion binding |
D | 0000122 | biological_process | negative regulation of transcription by RNA polymerase II |
D | 0004407 | molecular_function | histone deacetylase activity |
D | 0005634 | cellular_component | nucleus |
D | 0006338 | biological_process | chromatin remodeling |
D | 0046872 | molecular_function | metal ion binding |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 4 |
Details | binding site for residue ZN A 501 |
Chain | Residue |
A | ASP186 |
A | HIS188 |
A | ASP285 |
A | GQE504 |
site_id | AC2 |
Number of Residues | 5 |
Details | binding site for residue K A 502 |
Chain | Residue |
A | ASP184 |
A | ASP186 |
A | HIS188 |
A | SER207 |
A | VAL208 |
site_id | AC3 |
Number of Residues | 5 |
Details | binding site for residue K A 503 |
Chain | Residue |
A | PHE197 |
A | SER200 |
A | VAL203 |
A | SER243 |
A | HOH641 |
site_id | AC4 |
Number of Residues | 14 |
Details | binding site for residue GQE A 504 |
Chain | Residue |
A | LYS20 |
A | ASP100 |
A | HIS141 |
A | HIS142 |
A | GLY150 |
A | ASP186 |
A | HIS188 |
A | PHE216 |
A | ASP285 |
A | HIS292 |
A | GLY339 |
A | TYR341 |
A | ZN501 |
B | ASP50 |
site_id | AC5 |
Number of Residues | 11 |
Details | binding site for residue GOL A 505 |
Chain | Residue |
A | HIS188 |
A | HIS189 |
A | HIS210 |
A | ALA211 |
A | SER212 |
A | PHE215 |
A | PHE216 |
A | PRO217 |
A | GLY218 |
A | THR219 |
A | HOH621 |
site_id | AC6 |
Number of Residues | 8 |
Details | binding site for residue GOL A 506 |
Chain | Residue |
A | CYS15 |
A | PHE21 |
A | ARG24 |
A | TYR25 |
A | TYR110 |
A | TRP136 |
A | GLY137 |
A | TRP140 |
site_id | AC7 |
Number of Residues | 8 |
Details | binding site for residue GOL A 507 |
Chain | Residue |
A | HIS189 |
A | GLU194 |
A | THR219 |
A | GLY220 |
A | THR221 |
A | ASN223 |
A | LEU234 |
A | ASN246 |
site_id | AC8 |
Number of Residues | 3 |
Details | binding site for residue DMF A 508 |
Chain | Residue |
A | ARG12 |
A | GLN13 |
A | TYR377 |
site_id | AC9 |
Number of Residues | 4 |
Details | binding site for residue DMF A 509 |
Chain | Residue |
A | ASP93 |
A | SER94 |
A | SER96 |
B | ARG43 |
site_id | AD1 |
Number of Residues | 4 |
Details | binding site for residue ZN B 501 |
Chain | Residue |
B | ASP186 |
B | HIS188 |
B | ASP285 |
B | GQE504 |
site_id | AD2 |
Number of Residues | 5 |
Details | binding site for residue K B 502 |
Chain | Residue |
B | ASP184 |
B | ASP186 |
B | HIS188 |
B | SER207 |
B | VAL208 |
site_id | AD3 |
Number of Residues | 5 |
Details | binding site for residue K B 503 |
Chain | Residue |
B | PHE197 |
B | SER200 |
B | VAL203 |
B | SER243 |
B | HOH687 |
site_id | AD4 |
Number of Residues | 14 |
Details | binding site for residue GQE B 504 |
Chain | Residue |
A | ASP50 |
B | LYS20 |
B | ASP100 |
B | HIS141 |
B | HIS142 |
B | GLY150 |
B | ASP186 |
B | HIS188 |
B | ASP285 |
B | HIS292 |
B | GLY339 |
B | TYR341 |
B | ZN501 |
B | HOH642 |
site_id | AD5 |
Number of Residues | 8 |
Details | binding site for residue GOL B 505 |
Chain | Residue |
B | HIS189 |
B | GLU194 |
B | THR219 |
B | GLY220 |
B | THR221 |
B | PHE233 |
B | LEU234 |
B | ASN246 |
site_id | AD6 |
Number of Residues | 9 |
Details | binding site for residue GOL B 506 |
Chain | Residue |
B | PHE21 |
B | GLY22 |
B | ARG24 |
B | TYR25 |
B | TYR110 |
B | TRP136 |
B | TRP140 |
B | HOH665 |
B | CYS15 |
site_id | AD7 |
Number of Residues | 4 |
Details | binding site for residue GOL B 507 |
Chain | Residue |
B | TYR301 |
B | ARG352 |
B | ILE368 |
B | DMF510 |
site_id | AD8 |
Number of Residues | 10 |
Details | binding site for residue GOL B 508 |
Chain | Residue |
B | ASP345 |
B | ARG348 |
B | TYR381 |
B | GLY382 |
B | PRO383 |
B | ASP384 |
B | ILE389 |
B | ASP390 |
B | HOH626 |
B | HOH628 |
site_id | AD9 |
Number of Residues | 3 |
Details | binding site for residue DMF B 509 |
Chain | Residue |
B | TYR7 |
B | ASP30 |
B | ILE38 |
site_id | AE1 |
Number of Residues | 5 |
Details | binding site for residue DMF B 510 |
Chain | Residue |
B | TYR301 |
B | ARG352 |
B | MET366 |
B | ILE368 |
B | GOL507 |
site_id | AE2 |
Number of Residues | 4 |
Details | binding site for residue ZN C 501 |
Chain | Residue |
C | ASP186 |
C | HIS188 |
C | ASP285 |
C | GQE504 |
site_id | AE3 |
Number of Residues | 5 |
Details | binding site for residue K C 502 |
Chain | Residue |
C | ASP184 |
C | ASP186 |
C | HIS188 |
C | SER207 |
C | VAL208 |
site_id | AE4 |
Number of Residues | 5 |
Details | binding site for residue K C 503 |
Chain | Residue |
C | PHE197 |
C | SER200 |
C | VAL203 |
C | SER243 |
C | HOH658 |
site_id | AE5 |
Number of Residues | 13 |
Details | binding site for residue GQE C 504 |
Chain | Residue |
C | LYS20 |
C | ASP100 |
C | HIS141 |
C | HIS142 |
C | ASP186 |
C | HIS188 |
C | ASP285 |
C | HIS292 |
C | GLY339 |
C | TYR341 |
C | ZN501 |
C | HOH643 |
D | ASP50 |
site_id | AE6 |
Number of Residues | 9 |
Details | binding site for residue GOL C 505 |
Chain | Residue |
C | CYS15 |
C | PHE21 |
C | GLY22 |
C | ASP23 |
C | ARG24 |
C | TYR25 |
C | GLY137 |
C | TRP140 |
C | HOH602 |
site_id | AE7 |
Number of Residues | 5 |
Details | binding site for residue DMF C 506 |
Chain | Residue |
C | GLU131 |
C | LEU327 |
C | LYS330 |
C | VAL331 |
C | VAL361 |
site_id | AE8 |
Number of Residues | 5 |
Details | binding site for residue DMF C 507 |
Chain | Residue |
C | TYR301 |
C | ARG352 |
C | LEU356 |
C | MET366 |
C | HOH657 |
site_id | AE9 |
Number of Residues | 4 |
Details | binding site for residue ZN D 501 |
Chain | Residue |
D | ASP186 |
D | HIS188 |
D | ASP285 |
D | GQE504 |
site_id | AF1 |
Number of Residues | 5 |
Details | binding site for residue K D 502 |
Chain | Residue |
D | ASP184 |
D | ASP186 |
D | HIS188 |
D | SER207 |
D | VAL208 |
site_id | AF2 |
Number of Residues | 5 |
Details | binding site for residue K D 503 |
Chain | Residue |
D | PHE197 |
D | SER200 |
D | VAL203 |
D | SER243 |
D | HOH661 |
site_id | AF3 |
Number of Residues | 13 |
Details | binding site for residue GQE D 504 |
Chain | Residue |
D | LYS20 |
D | ASP100 |
D | HIS141 |
D | HIS142 |
D | ASP186 |
D | HIS188 |
D | PHE216 |
D | ASP285 |
D | HIS292 |
D | GLY339 |
D | TYR341 |
D | ZN501 |
D | HOH624 |
site_id | AF4 |
Number of Residues | 2 |
Details | binding site for residue DMF D 505 |
Chain | Residue |
D | CYS16 |
D | TYR377 |
site_id | AF5 |
Number of Residues | 5 |
Details | binding site for residue DMF D 506 |
Chain | Residue |
C | TYR99 |
D | PRO45 |
D | ALA120 |
D | SER123 |
D | ALA124 |