6HAF
Pyruvate oxidase variant E59Q from L. plantarum in complex with phosphate
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0000287 | molecular_function | magnesium ion binding |
A | 0003824 | molecular_function | catalytic activity |
A | 0016491 | molecular_function | oxidoreductase activity |
A | 0030976 | molecular_function | thiamine pyrophosphate binding |
A | 0046872 | molecular_function | metal ion binding |
A | 0047112 | molecular_function | pyruvate oxidase activity |
B | 0000287 | molecular_function | magnesium ion binding |
B | 0003824 | molecular_function | catalytic activity |
B | 0016491 | molecular_function | oxidoreductase activity |
B | 0030976 | molecular_function | thiamine pyrophosphate binding |
B | 0046872 | molecular_function | metal ion binding |
B | 0047112 | molecular_function | pyruvate oxidase activity |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 35 |
Details | binding site for residue FAD A 701 |
Chain | Residue |
A | HIS101 |
A | ARG264 |
A | VAL265 |
A | GLY284 |
A | ASN285 |
A | ASN286 |
A | TYR287 |
A | PRO288 |
A | PHE289 |
A | ASP306 |
A | ILE307 |
A | PHE121 |
A | ASP308 |
A | LYS311 |
A | ALA324 |
A | ASP325 |
A | ALA326 |
A | ASN398 |
A | SER416 |
A | ASN417 |
A | HOH806 |
A | HOH889 |
A | GLY220 |
A | HOH963 |
A | HOH1002 |
A | HOH1023 |
A | HOH1141 |
A | HOH1272 |
A | HOH1311 |
A | ILE221 |
A | GLY222 |
A | THR244 |
A | TYR245 |
A | ALA262 |
A | ASN263 |
site_id | AC2 |
Number of Residues | 6 |
Details | binding site for residue K A 702 |
Chain | Residue |
A | MET452 |
A | MET452 |
A | GLN455 |
A | GLN455 |
A | HOH984 |
A | HOH984 |
site_id | AC3 |
Number of Residues | 5 |
Details | binding site for residue MG A 703 |
Chain | Residue |
A | ASP447 |
A | ASN474 |
A | GLN476 |
A | TPP704 |
A | HOH868 |
site_id | AC4 |
Number of Residues | 27 |
Details | binding site for residue TPP A 704 |
Chain | Residue |
A | PRO33 |
A | GLN59 |
A | SER82 |
A | PRO85 |
A | HIS89 |
A | GLN122 |
A | VAL394 |
A | ASP396 |
A | ALA420 |
A | MET422 |
A | GLY446 |
A | ASP447 |
A | GLY448 |
A | GLY449 |
A | ASN474 |
A | GLN476 |
A | TYR477 |
A | GLY478 |
A | PHE479 |
A | ILE480 |
A | MG703 |
A | PO4712 |
A | HOH840 |
A | HOH868 |
A | HOH897 |
A | HOH924 |
A | HOH1049 |
site_id | AC5 |
Number of Residues | 9 |
Details | binding site for residue GOL A 705 |
Chain | Residue |
A | ALA23 |
A | TRP24 |
A | LYS75 |
A | TYR158 |
A | ALA186 |
A | TYR189 |
A | HOH913 |
A | HOH1241 |
B | HOH900 |
site_id | AC6 |
Number of Residues | 9 |
Details | binding site for residue GOL A 706 |
Chain | Residue |
A | LYS433 |
A | PRO437 |
A | GLU438 |
A | PRO466 |
A | ALA533 |
A | GLN534 |
A | HOH820 |
A | HOH1061 |
A | HOH1184 |
site_id | AC7 |
Number of Residues | 4 |
Details | binding site for residue GOL A 707 |
Chain | Residue |
A | TRP174 |
A | THR487 |
A | GLN489 |
A | HOH1165 |
site_id | AC8 |
Number of Residues | 7 |
Details | binding site for residue GOL A 708 |
Chain | Residue |
A | HOH1082 |
A | HOH1142 |
A | HOH1209 |
A | ARG264 |
A | GLU483 |
A | ASP486 |
A | GLU553 |
site_id | AC9 |
Number of Residues | 6 |
Details | binding site for residue GOL A 709 |
Chain | Residue |
A | SER410 |
A | ARG412 |
A | TYR436 |
A | ARG439 |
A | HOH895 |
A | HOH1438 |
site_id | AD1 |
Number of Residues | 8 |
Details | binding site for residue GOL A 710 |
Chain | Residue |
A | ARG224 |
A | PRO409 |
A | ASN411 |
A | ARG412 |
A | HOH895 |
A | HOH907 |
A | HOH932 |
A | HOH1177 |
site_id | AD2 |
Number of Residues | 6 |
Details | binding site for residue GOL A 711 |
Chain | Residue |
A | ILE54 |
A | LEU434 |
A | TYR463 |
A | HOH1208 |
B | GLU341 |
B | HOH1127 |
site_id | AD3 |
Number of Residues | 13 |
Details | binding site for residue PO4 A 712 |
Chain | Residue |
A | GLY34 |
A | GLY35 |
A | SER36 |
A | SER82 |
A | PHE111 |
A | GLN122 |
A | ILE480 |
A | TPP704 |
A | HOH821 |
A | HOH840 |
A | HOH841 |
A | HOH856 |
A | HOH1230 |
site_id | AD4 |
Number of Residues | 35 |
Details | binding site for residue FAD B 701 |
Chain | Residue |
B | HIS101 |
B | PHE121 |
B | GLY220 |
B | ILE221 |
B | GLY222 |
B | THR244 |
B | TYR245 |
B | ALA262 |
B | ASN263 |
B | ARG264 |
B | VAL265 |
B | GLY284 |
B | ASN285 |
B | ASN286 |
B | TYR287 |
B | PRO288 |
B | PHE289 |
B | ASP306 |
B | ILE307 |
B | ASP308 |
B | LYS311 |
B | ALA324 |
B | ASP325 |
B | ALA326 |
B | ASN398 |
B | SER416 |
B | ASN417 |
B | HOH875 |
B | HOH946 |
B | HOH982 |
B | HOH1003 |
B | HOH1072 |
B | HOH1115 |
B | HOH1186 |
B | HOH1310 |
site_id | AD5 |
Number of Residues | 6 |
Details | binding site for residue K B 702 |
Chain | Residue |
B | MET452 |
B | MET452 |
B | GLN455 |
B | GLN455 |
B | HOH972 |
B | HOH972 |
site_id | AD6 |
Number of Residues | 5 |
Details | binding site for residue MG B 703 |
Chain | Residue |
B | ASP447 |
B | ASN474 |
B | GLN476 |
B | TPP704 |
B | HOH862 |
site_id | AD7 |
Number of Residues | 26 |
Details | binding site for residue TPP B 704 |
Chain | Residue |
B | PRO33 |
B | GLN59 |
B | SER82 |
B | PRO85 |
B | HIS89 |
B | VAL394 |
B | ASP396 |
B | ALA420 |
B | MET422 |
B | GLY446 |
B | ASP447 |
B | GLY448 |
B | GLY449 |
B | ASN474 |
B | GLN476 |
B | TYR477 |
B | GLY478 |
B | PHE479 |
B | ILE480 |
B | MG703 |
B | PO4710 |
B | HOH862 |
B | HOH885 |
B | HOH924 |
B | HOH997 |
B | HOH1082 |
site_id | AD8 |
Number of Residues | 7 |
Details | binding site for residue GOL B 705 |
Chain | Residue |
A | HOH850 |
B | ALA569 |
B | PHE570 |
B | ARG573 |
B | TYR574 |
B | HOH952 |
B | HOH1047 |
site_id | AD9 |
Number of Residues | 9 |
Details | binding site for residue GOL B 706 |
Chain | Residue |
B | LYS433 |
B | PRO437 |
B | GLU438 |
B | PRO466 |
B | ALA533 |
B | GLN534 |
B | HOH826 |
B | HOH854 |
B | HOH953 |
site_id | AE1 |
Number of Residues | 6 |
Details | binding site for residue GOL B 707 |
Chain | Residue |
B | SER410 |
B | ARG412 |
B | TYR436 |
B | ARG439 |
B | HOH813 |
B | HOH820 |
site_id | AE2 |
Number of Residues | 5 |
Details | binding site for residue GOL B 708 |
Chain | Residue |
B | ARG224 |
B | PRO409 |
B | HOH813 |
B | HOH904 |
B | HOH978 |
site_id | AE3 |
Number of Residues | 12 |
Details | binding site for residue GOL B 709 |
Chain | Residue |
B | GLY25 |
B | ASP27 |
B | HIS28 |
B | ASP69 |
B | THR73 |
B | LYS75 |
B | ILE76 |
B | ASN435 |
B | HOH808 |
B | HOH821 |
B | HOH979 |
B | HOH1103 |
site_id | AE4 |
Number of Residues | 12 |
Details | binding site for residue PO4 B 710 |
Chain | Residue |
B | GLY34 |
B | GLY35 |
B | SER36 |
B | SER82 |
B | PHE111 |
B | GLN122 |
B | ILE480 |
B | TPP704 |
B | HOH842 |
B | HOH855 |
B | HOH885 |
B | HOH887 |
Functional Information from PROSITE/UniProt
site_id | PS00187 |
Number of Residues | 20 |
Details | TPP_ENZYMES Thiamine pyrophosphate enzymes signature. IAaklnyPerqvFnLaGDGG |
Chain | Residue | Details |
A | ILE430-GLY449 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 6 |
Details | BINDING: |
Chain | Residue | Details |
A | ASP447 | |
A | ASN474 | |
A | GLN476 | |
B | ASP447 | |
B | ASN474 | |
B | GLN476 |
Catalytic Information from CSA
site_id | MCSA1 |
Number of Residues | 8 |
Details | M-CSA 274 |
Chain | Residue | Details |
A | GLN59 | activator, hydrogen bond acceptor, increase acidity, proton acceptor, proton donor |
A | PHE121 | electrostatic destabiliser, polar/non-polar interaction, promote heterolysis, radical stabiliser |
A | GLN122 | activator, electrostatic destabiliser, hydrogen bond acceptor, hydrogen bond donor, promote heterolysis |
A | ARG264 | radical stabiliser |
A | VAL394 | polar/non-polar interaction, promote heterolysis, radical stabiliser, steric role |
A | PHE479 | electrostatic destabiliser, polar/non-polar interaction, promote heterolysis, radical stabiliser |
A | ILE480 | electrostatic destabiliser, polar/non-polar interaction, promote heterolysis, radical stabiliser |
A | GLU483 | radical stabiliser |
site_id | MCSA2 |
Number of Residues | 8 |
Details | M-CSA 274 |
Chain | Residue | Details |
B | GLN59 | activator, hydrogen bond acceptor, increase acidity, proton acceptor, proton donor |
B | PHE121 | electrostatic destabiliser, polar/non-polar interaction, promote heterolysis, radical stabiliser |
B | GLN122 | activator, electrostatic destabiliser, hydrogen bond acceptor, hydrogen bond donor, promote heterolysis |
B | ARG264 | radical stabiliser |
B | VAL394 | polar/non-polar interaction, promote heterolysis, radical stabiliser, steric role |
B | PHE479 | electrostatic destabiliser, polar/non-polar interaction, promote heterolysis, radical stabiliser |
B | ILE480 | electrostatic destabiliser, polar/non-polar interaction, promote heterolysis, radical stabiliser |
B | GLU483 | radical stabiliser |