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6H52

Crystal structure of human KDM5B in complex with compound 34g

Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 801
ChainResidue
ACYS692
ACYS695
ACYS715
AHIS718

site_idAC2
Number of Residues4
Detailsbinding site for residue ZN A 802
ChainResidue
ACYS706
ACYS708
ACYS723
ACYS725

site_idAC3
Number of Residues6
Detailsbinding site for residue MN A 803
ChainResidue
AASN91
ALEU413
ATHR416
AGLU419
AHOH1012
ALEU90

site_idAC4
Number of Residues5
Detailsbinding site for residue MN A 804
ChainResidue
AHIS499
AGLU501
AHIS587
AFQN813
AHOH913

site_idAC5
Number of Residues3
Detailsbinding site for residue DMS A 805
ChainResidue
AHIS399
AHIS399
AHOH927

site_idAC6
Number of Residues6
Detailsbinding site for residue DMS A 806
ChainResidue
ATYR488
ASER507
AALA599
AVAL600
AASN601
AFQN813

site_idAC7
Number of Residues7
Detailsbinding site for residue DMS A 807
ChainResidue
AGLU631
ACYS634
ALYS635
AGLU683
APHE700
AARG735
ATYR736

site_idAC8
Number of Residues1
Detailsbinding site for residue DMS A 808
ChainResidue
AGLY711

site_idAC9
Number of Residues4
Detailsbinding site for residue DMS A 809
ChainResidue
ASER677
ALEU732
ATYR734
AHOH1032

site_idAD1
Number of Residues8
Detailsbinding site for residue DMS A 810
ChainResidue
AGLN88
ATHR97
AARG98
ATYR425
ASER495
APHE496
ACYS497
AHIS499

site_idAD2
Number of Residues8
Detailsbinding site for residue DMS A 811
ChainResidue
APHE83
AGLY426
AALA427
AASP428
ALEU487
AVAL489
AHOH929
AHOH930

site_idAD3
Number of Residues4
Detailsbinding site for residue PO4 A 812
ChainResidue
AHIS622
ALYS694
AHIS718
AHOH1031

site_idAD4
Number of Residues13
Detailsbinding site for residue FQN A 813
ChainResidue
ATYR425
ATRP486
ATYR488
APHE496
AHIS499
AGLU501
ALYS517
ATRP519
AHIS587
AMN804
ADMS806
AHOH913
AHOH1095

site_idAD5
Number of Residues4
Detailsbinding site for residue EDO A 814
ChainResidue
AGLY524
ATYR525
AARG584
AHOH955

site_idAD6
Number of Residues8
Detailsbinding site for residue EDO A 815
ChainResidue
AASP688
AGLU689
AARG690
AGLN691
AVAL693
AGLY711
ALEU713
AHOH1021

site_idAD7
Number of Residues5
Detailsbinding site for residue EDO A 816
ChainResidue
AASP502
AGLN551
ATYR618
AARG623
ATYR624

site_idAD8
Number of Residues2
Detailsbinding site for residue EDO A 817
ChainResidue
AARG679
AARG679

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues52
DetailsZN_FING: C5HC2 => ECO:0000269|PubMed:26741168, ECO:0000269|PubMed:27214403, ECO:0000269|PubMed:28262558
ChainResidueDetails
ACYS692-MET744

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P29375
ChainResidueDetails
ATYR425
ASER507
AASN509
ALYS517

site_idSWS_FT_FI3
Number of Residues3
DetailsBINDING: BINDING => ECO:0000305|PubMed:26741168, ECO:0000305|PubMed:27214403, ECO:0000305|PubMed:28262558
ChainResidueDetails
AHIS499
AGLU501
AHIS587

site_idSWS_FT_FI4
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:25755297, ECO:0007744|PubMed:28112733
ChainResidueDetails
ALYS769

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PDB entries from 2024-07-17

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