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6H50

Crystal structure of human KDM5B in complex with compound 34a

Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 801
ChainResidue
ACYS692
ACYS695
ACYS715
AHIS718

site_idAC2
Number of Residues4
Detailsbinding site for residue ZN A 802
ChainResidue
ACYS706
ACYS708
ACYS723
ACYS725

site_idAC3
Number of Residues6
Detailsbinding site for residue MN A 803
ChainResidue
AASN91
ALEU413
ATHR416
AGLU419
AHOH1046
ALEU90

site_idAC4
Number of Residues5
Detailsbinding site for residue MN A 804
ChainResidue
AHIS499
AGLU501
AHIS587
AFO2809
AHOH908

site_idAC5
Number of Residues8
Detailsbinding site for residue EDO A 805
ChainResidue
APHE83
AGLY426
AALA427
AASP428
APHE434
ALEU487
AVAL489
AHOH956

site_idAC6
Number of Residues6
Detailsbinding site for residue EDO A 806
ChainResidue
AARG670
AVAL674
AILE675
ADMS814
AHOH1004
AHOH1041

site_idAC7
Number of Residues2
Detailsbinding site for residue EDO A 807
ChainResidue
AARG679
AARG679

site_idAC8
Number of Residues5
Detailsbinding site for residue PO4 A 808
ChainResidue
AHIS622
ALYS694
AHIS718
AHOH958
AHOH990

site_idAC9
Number of Residues13
Detailsbinding site for residue FO2 A 809
ChainResidue
ATYR425
ATRP486
ATYR488
APHE496
AHIS499
AGLU501
ALYS517
ATRP519
AHIS587
AMN804
ADMS810
AHOH908
AHOH1030

site_idAD1
Number of Residues7
Detailsbinding site for residue DMS A 810
ChainResidue
ATYR488
ASER507
AALA599
AVAL600
AASN601
AFO2809
AHOH917

site_idAD2
Number of Residues7
Detailsbinding site for residue DMS A 811
ChainResidue
AGLN88
ATHR97
ATYR425
ASER495
APHE496
ACYS497
AHOH921

site_idAD3
Number of Residues2
Detailsbinding site for residue DMS A 812
ChainResidue
AHIS399
AHOH934

site_idAD4
Number of Residues7
Detailsbinding site for residue DMS A 813
ChainResidue
AGLU631
ACYS634
ALYS635
AGLU683
APHE700
AARG735
ATYR736

site_idAD5
Number of Residues6
Detailsbinding site for residue DMS A 814
ChainResidue
ASER677
ALEU732
ATYR734
ATHR737
AEDO806
AHOH1041

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues52
DetailsZN_FING: C5HC2 => ECO:0000269|PubMed:26741168, ECO:0000269|PubMed:27214403, ECO:0000269|PubMed:28262558
ChainResidueDetails
ACYS692-MET744

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P29375
ChainResidueDetails
ATYR425
ASER507
AASN509
ALYS517

site_idSWS_FT_FI3
Number of Residues3
DetailsBINDING: BINDING => ECO:0000305|PubMed:26741168, ECO:0000305|PubMed:27214403, ECO:0000305|PubMed:28262558
ChainResidueDetails
AHIS499
AGLU501
AHIS587

site_idSWS_FT_FI4
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:25755297, ECO:0007744|PubMed:28112733
ChainResidueDetails
ALYS769

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PDB entries from 2024-07-24

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