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6H4Z

Crystal structure of human KDM5B in complex with compound 16a

Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 801
ChainResidue
ACYS692
ACYS695
ACYS715
AHIS718

site_idAC2
Number of Residues4
Detailsbinding site for residue ZN A 802
ChainResidue
ACYS706
ACYS708
ACYS723
ACYS725

site_idAC3
Number of Residues5
Detailsbinding site for residue MN A 803
ChainResidue
AGLU501
AHIS587
AFQ5805
AHOH920
AHIS499

site_idAC4
Number of Residues6
Detailsbinding site for residue MN A 804
ChainResidue
ALEU90
AASN91
ALEU413
ATHR416
AGLU419
AHOH936

site_idAC5
Number of Residues14
Detailsbinding site for residue FQ5 A 805
ChainResidue
ATYR425
AASP428
ACYS480
ATYR488
APHE496
AHIS499
AGLU501
ALYS517
ATRP519
AHIS587
AMN803
ADMS807
ADMS811
AHOH920

site_idAC6
Number of Residues4
Detailsbinding site for residue FQ5 A 806
ChainResidue
AGLU31
AGLN58
ATYR525
ATYR569

site_idAC7
Number of Residues5
Detailsbinding site for residue DMS A 807
ChainResidue
ATRP486
ATYR488
AGLU501
AASN601
AFQ5805

site_idAC8
Number of Residues4
Detailsbinding site for residue DMS A 808
ChainResidue
ATRP504
AHIS617
ATYR618
AEDO821

site_idAC9
Number of Residues4
Detailsbinding site for residue DMS A 809
ChainResidue
AGLU631
AGLU683
APHE700
ATYR736

site_idAD1
Number of Residues6
Detailsbinding site for residue DMS A 811
ChainResidue
AARG98
APHE496
ACYS497
AHIS499
AFQ5805
ADMS812

site_idAD2
Number of Residues7
Detailsbinding site for residue DMS A 812
ChainResidue
AGLN88
AGLN96
ATHR97
ASER495
APHE496
ACYS497
ADMS811

site_idAD3
Number of Residues2
Detailsbinding site for residue DMS A 813
ChainResidue
AARG666
ASER677

site_idAD4
Number of Residues1
Detailsbinding site for residue DMS A 814
ChainResidue
ACYS723

site_idAD5
Number of Residues3
Detailsbinding site for residue DMS A 815
ChainResidue
AHIS399
AHIS399
AHOH903

site_idAD6
Number of Residues6
Detailsbinding site for residue EDO A 816
ChainResidue
AASP630
ACYS699
APHE700
AMET701
ASER702
AHOH902

site_idAD7
Number of Residues2
Detailsbinding site for residue EDO A 817
ChainResidue
AGLY524
AARG584

site_idAD8
Number of Residues5
Detailsbinding site for residue EDO A 818
ChainResidue
AHIS622
AHIS718
AHOH941
AHOH984
AHOH1003

site_idAD9
Number of Residues6
Detailsbinding site for residue EDO A 819
ChainResidue
AASP688
AGLU689
AARG690
AGLN691
AGLY711
ALEU713

site_idAE1
Number of Residues6
Detailsbinding site for residue EDO A 820
ChainResidue
AMET25
ALEU27
AASN559
APRO743
AASN746
AHOH938

site_idAE2
Number of Residues6
Detailsbinding site for residue EDO A 821
ChainResidue
ADMS808
AASP502
AGLN551
ATYR618
AARG623
ATYR624

site_idAE3
Number of Residues1
Detailsbinding site for residue MN A 822
ChainResidue
AASP630

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues52
DetailsZN_FING: C5HC2 => ECO:0000269|PubMed:26741168, ECO:0000269|PubMed:27214403, ECO:0000269|PubMed:28262558
ChainResidueDetails
ACYS692-MET744

site_idSWS_FT_FI2
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:P29375
ChainResidueDetails
ATYR425
ASER507
AASN509
ALYS517

site_idSWS_FT_FI3
Number of Residues3
DetailsBINDING: BINDING => ECO:0000305|PubMed:26741168, ECO:0000305|PubMed:27214403, ECO:0000305|PubMed:28262558
ChainResidueDetails
AHIS499
AGLU501
AHIS587

site_idSWS_FT_FI4
Number of Residues2
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2) => ECO:0007744|PubMed:25755297, ECO:0007744|PubMed:28112733
ChainResidueDetails
ALYS769

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PDB entries from 2024-07-17

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