Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6H4O

Crystal structure of human KDM4A in complex with compound 18a

Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 401
ChainResidue
AHIS188
AGLU190
AHIS276
AFQH403

site_idAC2
Number of Residues4
Detailsbinding site for residue ZN A 402
ChainResidue
ACYS234
AHIS240
ACYS306
ACYS308

site_idAC3
Number of Residues11
Detailsbinding site for residue FQH A 403
ChainResidue
ATYR177
APHE185
AHIS188
AGLU190
AASP191
ALYS206
ATRP208
AHIS276
AZN401
AHOH576
ATYR132

site_idAC4
Number of Residues11
Detailsbinding site for residue GOL A 404
ChainResidue
AVAL75
ATHR76
AGLY77
ATHR126
APHE127
AHOH550
CVAL75
CTHR76
CGLY77
CTHR126
CPHE127

site_idAC5
Number of Residues1
Detailsbinding site for residue CL A 405
ChainResidue
ATYR59

site_idAC6
Number of Residues4
Detailsbinding site for residue ZN B 401
ChainResidue
BHIS188
BGLU190
BHIS276
BFQH403

site_idAC7
Number of Residues4
Detailsbinding site for residue ZN B 402
ChainResidue
BCYS234
BHIS240
BCYS306
BCYS308

site_idAC8
Number of Residues10
Detailsbinding site for residue FQH B 403
ChainResidue
BTYR132
BTYR175
BTYR177
BPHE185
BHIS188
BGLU190
BLYS206
BTRP208
BHIS276
BZN401

site_idAC9
Number of Residues10
Detailsbinding site for residue GOL B 404
ChainResidue
BVAL75
BTHR76
BGLY77
BTHR126
BPHE127
DVAL75
DTHR76
DGLY77
DTHR126
DPHE127

site_idAD1
Number of Residues5
Detailsbinding site for residue ZN C 401
ChainResidue
CHIS188
CGLU190
CHIS276
CFQH403
CHOH501

site_idAD2
Number of Residues4
Detailsbinding site for residue ZN C 402
ChainResidue
CCYS234
CHIS240
CCYS306
CCYS308

site_idAD3
Number of Residues14
Detailsbinding site for residue FQH C 403
ChainResidue
CTYR132
CASP135
CGLU169
CTYR175
CTYR177
CPHE185
CHIS188
CGLU190
CASP191
CLYS206
CTRP208
CHIS276
CZN401
CHOH501

site_idAD4
Number of Residues4
Detailsbinding site for residue DMS C 404
ChainResidue
CALA12
CARG13
CPHE257
CHOH543

site_idAD5
Number of Residues2
Detailsbinding site for residue DMS C 405
ChainResidue
CARG294
CPHE324

site_idAD6
Number of Residues1
Detailsbinding site for residue CL C 406
ChainResidue
CHOH592

site_idAD7
Number of Residues5
Detailsbinding site for residue ZN D 401
ChainResidue
DHIS188
DGLU190
DHIS276
DFQH403
DHOH506

site_idAD8
Number of Residues4
Detailsbinding site for residue ZN D 402
ChainResidue
DCYS234
DHIS240
DCYS306
DCYS308

site_idAD9
Number of Residues11
Detailsbinding site for residue FQH D 403
ChainResidue
DASP135
DTYR177
DPHE185
DHIS188
DGLU190
DLYS206
DTRP208
DHIS276
DZN401
DHOH506
DTYR132

site_idAE1
Number of Residues6
Detailsbinding site for residue DMS D 404
ChainResidue
DASP193
DLYS217
DTYR273
DTYR299
DGLN302
DHIS343

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues12
DetailsBINDING: BINDING => ECO:0000269|PubMed:16677698
ChainResidueDetails
ATYR132
DTYR132
DASN198
DLYS206
AASN198
ALYS206
BTYR132
BASN198
BLYS206
CTYR132
CASN198
CLYS206

site_idSWS_FT_FI2
Number of Residues8
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000269|PubMed:16677698, ECO:0000305|PubMed:26741168
ChainResidueDetails
AHIS188
AHIS276
BHIS188
BHIS276
CHIS188
CHIS276
DHIS188
DHIS276

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0000269|PubMed:16677698, ECO:0000305|PubMed:26741168
ChainResidueDetails
AGLU190
BGLU190
CGLU190
DGLU190

site_idSWS_FT_FI4
Number of Residues16
DetailsBINDING: BINDING => ECO:0007744|PDB:5F2W, ECO:0007744|PDB:5F32, ECO:0007744|PDB:5F37, ECO:0007744|PDB:5F39, ECO:0007744|PDB:5F3E, ECO:0007744|PDB:5F3G, ECO:0007744|PDB:5F5I
ChainResidueDetails
ACYS234
CHIS240
CCYS306
CCYS308
DCYS234
DHIS240
DCYS306
DCYS308
AHIS240
ACYS306
ACYS308
BCYS234
BHIS240
BCYS306
BCYS308
CCYS234

site_idSWS_FT_FI5
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:B2RXH2
ChainResidueDetails
ALYS241
BLYS241
CLYS241
DLYS241

site_idSWS_FT_FI6
Number of Residues4
DetailsMOD_RES: N-acetylalanine => ECO:0007744|PubMed:19413330
ChainResidueDetails
AALA2
BALA2
CALA2
DALA2

Catalytic Information from CSA
site_idMCSA1
Number of Residues6
DetailsM-CSA 370
ChainResidueDetails
AGLY170hydrogen bond acceptor, steric role
ATYR177hydrogen bond donor, steric role
AHIS188metal ligand
AGLU190attractive charge-charge interaction, hydrogen bond acceptor, metal ligand, steric role
AHIS276metal ligand
ASER288hydrogen bond donor, steric role

site_idMCSA2
Number of Residues6
DetailsM-CSA 370
ChainResidueDetails
BGLY170hydrogen bond acceptor, steric role
BTYR177hydrogen bond donor, steric role
BHIS188metal ligand
BGLU190attractive charge-charge interaction, hydrogen bond acceptor, metal ligand, steric role
BHIS276metal ligand
BSER288hydrogen bond donor, steric role

site_idMCSA3
Number of Residues6
DetailsM-CSA 370
ChainResidueDetails
CGLY170hydrogen bond acceptor, steric role
CTYR177hydrogen bond donor, steric role
CHIS188metal ligand
CGLU190attractive charge-charge interaction, hydrogen bond acceptor, metal ligand, steric role
CHIS276metal ligand
CSER288hydrogen bond donor, steric role

site_idMCSA4
Number of Residues6
DetailsM-CSA 370
ChainResidueDetails
DGLY170hydrogen bond acceptor, steric role
DTYR177hydrogen bond donor, steric role
DHIS188metal ligand
DGLU190attractive charge-charge interaction, hydrogen bond acceptor, metal ligand, steric role
DHIS276metal ligand
DSER288hydrogen bond donor, steric role

217705

PDB entries from 2024-03-27

PDB statisticsPDBj update infoContact PDBjnumon