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6H0Y

Crystal Structure of KDM4D with tetrazolylhydrazide ligand NS022

Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 401
ChainResidue
ACYS238
AHIS244
ACYS310
ACYS312

site_idAC2
Number of Residues6
Detailsbinding site for residue NA A 402
ChainResidue
AHOH817
AASN17
AASN262
AHOH585
AHOH650
AHOH817

site_idAC3
Number of Residues4
Detailsbinding site for residue EDO A 403
ChainResidue
AARG123
ALYS124
ALYS127
AASN128

site_idAC4
Number of Residues7
Detailsbinding site for residue EDO A 404
ChainResidue
ALYS150
AGLN151
ATRP152
AASN153
AHIS156
AHOH626
AHOH631

site_idAC5
Number of Residues3
Detailsbinding site for residue EDO A 405
ChainResidue
ATHR252
AARG263
AHOH747

site_idAC6
Number of Residues6
Detailsbinding site for residue EDO A 406
ChainResidue
ASER80
ATHR87
ACYS168
ALYS305
AHOH544
AHOH617

site_idAC7
Number of Residues6
Detailsbinding site for residue EDO A 407
ChainResidue
APHE118
AGLU119
AARG263
AILE264
ATHR265
AHOH555

site_idAC8
Number of Residues3
Detailsbinding site for residue EDO A 408
ChainResidue
AGLU27
ATYR37
AHOH542

site_idAC9
Number of Residues6
Detailsbinding site for residue EDO A 409
ChainResidue
ATYR181
AGLU194
ASER200
AALA292
AASN294
AFHZ414

site_idAD1
Number of Residues6
Detailsbinding site for residue EDO A 410
ChainResidue
AMET19
AILE20
AHOH576
AHOH765
AHOH786
AHOH803

site_idAD2
Number of Residues8
Detailsbinding site for residue SO4 A 411
ChainResidue
AARG60
AGLU61
ATHR62
AASN65
AHOH515
AHOH543
AHOH556
AHOH798

site_idAD3
Number of Residues6
Detailsbinding site for residue SO4 A 412
ChainResidue
APRO113
ALYS124
AASN128
ATRP185
ALYS186
AHOH636

site_idAD4
Number of Residues7
Detailsbinding site for residue NI A 413
ChainResidue
AHIS192
AGLU194
AHIS280
AFHZ414
AHOH620
AHOH686
AHOH787

site_idAD5
Number of Residues20
Detailsbinding site for residue FHZ A 414
ChainResidue
AGLN88
ATYR136
ATYR181
ATHR188
APHE189
AALA190
AHIS192
AGLU194
AASN202
ALYS210
ALYS245
AHIS280
AEDO409
ANI413
AHOH517
AHOH620
AHOH686
AHOH763
AHOH787
AHOH801

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:B2RXH2
ChainResidueDetails
ATYR136
AASN202
ALYS210
ALYS245

site_idSWS_FT_FI2
Number of Residues3
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000305|PubMed:26741168
ChainResidueDetails
AHIS192
AGLU194
AHIS280

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0007744|PDB:5F5A, ECO:0007744|PDB:5F5C
ChainResidueDetails
ACYS238
AHIS244
ACYS310
ACYS312

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: PolyADP-ribosyl glutamic acid => ECO:0000269|PubMed:23102699
ChainResidueDetails
AGLU26
AGLU27

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PDB entries from 2025-06-18

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