6GS3
Crystal Structure of the Uperin-3.5 peptide from Uperoleia mjobergii forming cross-alpha fibril
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005576 | cellular_component | extracellular region |
| A | 0006952 | biological_process | defense response |
| A | 0042742 | biological_process | defense response to bacterium |
| A | 0042803 | molecular_function | protein homodimerization activity |
| A | 0044218 | cellular_component | other organism cell membrane |
| A | 0050830 | biological_process | defense response to Gram-positive bacterium |
| A | 0051715 | biological_process | cytolysis in another organism |
| B | 0005576 | cellular_component | extracellular region |
| B | 0006952 | biological_process | defense response |
| B | 0042742 | biological_process | defense response to bacterium |
| B | 0042803 | molecular_function | protein homodimerization activity |
| B | 0044218 | cellular_component | other organism cell membrane |
| B | 0050830 | biological_process | defense response to Gram-positive bacterium |
| B | 0051715 | biological_process | cytolysis in another organism |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 3 |
| Details | binding site for residue SCN A 101 |
| Chain | Residue |
| A | SER11 |
| A | LYS14 |
| B | SER11 |
| site_id | AC2 |
| Number of Residues | 3 |
| Details | binding site for residue K B 101 |
| Chain | Residue |
| A | ARG7 |
| B | LYS14 |
| B | VAL17 |
| site_id | AC3 |
| Number of Residues | 6 |
| Details | binding site for residue K B 102 |
| Chain | Residue |
| A | HOH208 |
| B | ASP4 |
| B | ARG7 |
| A | ASN15 |
| A | HOH203 |
| A | HOH204 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 32 |
| Details | Peptide: {"description":"Uperin-3.5","featureId":"PRO_0000043858"} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 2 |
| Details | Site: {"description":"Involved in inter-helical interactions along the fibril","evidences":[{"source":"PubMed","id":"33431675","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 2 |
| Details | Modified residue: {"description":"Valine amide","evidences":[{"source":"Reference","evidenceCode":"ECO:0000269","citation":{"citationType":"journal article","publicationDate":"1996","firstPage":"1325","lastPage":"1331","volume":"49","journal":"Aust. J. Chem.","title":"New antibiotic uperin peptides from the dorsal glands of the australian toadlet Uperoleia mjobergii.","authors":["Bradford A.M.","Bowie J.H.","Tyler M.J.","Wallace J.C."]}}]} |
| Chain | Residue | Details |
