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6GOH

X-ray structure of the adduct formed upon reaction of lysozyme with a Pt(II) complex bearing N,N-pyridylbenzimidazole derivative with an alkylated sulphonate side chain

Functional Information from GO Data
ChainGOidnamespacecontents
A0003796molecular_functionlysozyme activity
A0005515molecular_functionprotein binding
A0005576cellular_componentextracellular region
A0005615cellular_componentextracellular space
A0005737cellular_componentcytoplasm
A0005783cellular_componentendoplasmic reticulum
A0016231molecular_functionbeta-N-acetylglucosaminidase activity
A0016798molecular_functionhydrolase activity, acting on glycosyl bonds
A0016998biological_processcell wall macromolecule catabolic process
A0031640biological_processkilling of cells of another organism
A0042742biological_processdefense response to bacterium
A0042802molecular_functionidentical protein binding
A0050829biological_processdefense response to Gram-negative bacterium
A0050830biological_processdefense response to Gram-positive bacterium
A0051672biological_processobsolete catabolism by organism of cell wall peptidoglycan in other organism
Functional Information from PDB Data
site_idAC1
Number of Residues3
Detailsbinding site for residue DMS A 201
ChainResidue
AGLN57
ATRP63
ATRP108

site_idAC2
Number of Residues5
Detailsbinding site for residue DMS A 202
ChainResidue
AGLU7
AARG14
APT203
ACL205
AHOH305

site_idAC3
Number of Residues6
Detailsbinding site for residue PT A 203
ChainResidue
AASP87
ATHR89
ADMS202
ACL205
AHOH333
AHIS15

site_idAC4
Number of Residues3
Detailsbinding site for residue PT A 204
ChainResidue
AHIS15
AHOH303
AHOH368

site_idAC5
Number of Residues5
Detailsbinding site for residue CL A 205
ChainResidue
AHIS15
AASP87
ATHR89
ADMS202
APT203

site_idAC6
Number of Residues8
Detailsbinding site for residue F7T A 206
ChainResidue
AARG5
ASER100
AASP101
AGLY102
AARG112
AALA122
ATRP123
AF7T207

site_idAC7
Number of Residues11
Detailsbinding site for residue F7T A 207
ChainResidue
ALYS33
AASN37
ATRP62
ATRP63
ALEU75
AASP101
AGLN121
AF7T206
AHOH302
AHOH304
AHOH307

Functional Information from PROSITE/UniProt
site_idPS00128
Number of Residues19
DetailsGLYCOSYL_HYDROL_F22_1 Glycosyl hydrolases family 22 (GH22) domain signature. CnipCsaLlssDItasvnC
ChainResidueDetails
ACYS76-CYS94

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues2
DetailsACT_SITE:
ChainResidueDetails
AGLU35
AASP52

site_idSWS_FT_FI2
Number of Residues1
DetailsBINDING:
ChainResidueDetails
AASP101

Catalytic Information from CSA
site_idMCSA1
Number of Residues6
DetailsM-CSA 203
ChainResidueDetails
AGLU35hydrogen bond acceptor, hydrogen bond donor, proton acceptor, proton donor
AASN46
AASP48
ASER50
AASP52covalently attached, electrostatic stabiliser, nucleofuge, nucleophile, polar/non-polar interaction
AASN59

220472

PDB entries from 2024-05-29

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