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6GEN

Chromatin remodeller-nucleosome complex at 4.5 A resolution.

Functional Information from GO Data
ChainGOidnamespacecontents
A0000500cellular_componentRNA polymerase I upstream activating factor complex
A0000786cellular_componentnucleosome
A0003677molecular_functionDNA binding
A0005515molecular_functionprotein binding
A0005634cellular_componentnucleus
A0005694cellular_componentchromosome
A0006325biological_processchromatin organization
A0006355biological_processregulation of DNA-templated transcription
A0006878biological_processintracellular copper ion homeostasis
A0008823molecular_functioncupric reductase (NADH) activity
A0009060biological_processaerobic respiration
A0009303biological_processrRNA transcription
A0030527molecular_functionstructural constituent of chromatin
A0031298cellular_componentreplication fork protection complex
A0032991cellular_componentprotein-containing complex
A0042790biological_processnucleolar large rRNA transcription by RNA polymerase I
A0043505cellular_componentCENP-A containing nucleosome
A0043935biological_processsexual sporulation resulting in formation of a cellular spore
A0045943biological_processpositive regulation of transcription by RNA polymerase I
A0046982molecular_functionprotein heterodimerization activity
A0070911biological_processglobal genome nucleotide-excision repair
B0000500cellular_componentRNA polymerase I upstream activating factor complex
B0000786cellular_componentnucleosome
B0003677molecular_functionDNA binding
B0005515molecular_functionprotein binding
B0005634cellular_componentnucleus
B0005694cellular_componentchromosome
B0006325biological_processchromatin organization
B0006355biological_processregulation of DNA-templated transcription
B0006878biological_processintracellular copper ion homeostasis
B0008823molecular_functioncupric reductase (NADH) activity
B0009060biological_processaerobic respiration
B0009303biological_processrRNA transcription
B0030527molecular_functionstructural constituent of chromatin
B0031298cellular_componentreplication fork protection complex
B0032991cellular_componentprotein-containing complex
B0042790biological_processnucleolar large rRNA transcription by RNA polymerase I
B0043505cellular_componentCENP-A containing nucleosome
B0043935biological_processsexual sporulation resulting in formation of a cellular spore
B0045943biological_processpositive regulation of transcription by RNA polymerase I
B0046982molecular_functionprotein heterodimerization activity
B0070911biological_processglobal genome nucleotide-excision repair
C0000500cellular_componentRNA polymerase I upstream activating factor complex
C0000786cellular_componentnucleosome
C0003677molecular_functionDNA binding
C0005515molecular_functionprotein binding
C0005634cellular_componentnucleus
C0005694cellular_componentchromosome
C0006325biological_processchromatin organization
C0006334biological_processnucleosome assembly
C0006355biological_processregulation of DNA-templated transcription
C0030527molecular_functionstructural constituent of chromatin
C0031298cellular_componentreplication fork protection complex
C0032991cellular_componentprotein-containing complex
C0042790biological_processnucleolar large rRNA transcription by RNA polymerase I
C0042802molecular_functionidentical protein binding
C0045943biological_processpositive regulation of transcription by RNA polymerase I
C0046982molecular_functionprotein heterodimerization activity
D0000500cellular_componentRNA polymerase I upstream activating factor complex
D0000786cellular_componentnucleosome
D0003677molecular_functionDNA binding
D0005515molecular_functionprotein binding
D0005634cellular_componentnucleus
D0005694cellular_componentchromosome
D0006325biological_processchromatin organization
D0006334biological_processnucleosome assembly
D0006355biological_processregulation of DNA-templated transcription
D0030527molecular_functionstructural constituent of chromatin
D0031298cellular_componentreplication fork protection complex
D0032991cellular_componentprotein-containing complex
D0042790biological_processnucleolar large rRNA transcription by RNA polymerase I
D0042802molecular_functionidentical protein binding
D0045943biological_processpositive regulation of transcription by RNA polymerase I
D0046982molecular_functionprotein heterodimerization activity
E0000122biological_processnegative regulation of transcription by RNA polymerase II
E0000786cellular_componentnucleosome
E0003677molecular_functionDNA binding
E0005515molecular_functionprotein binding
E0005634cellular_componentnucleus
E0005694cellular_componentchromosome
E0006281biological_processDNA repair
E0006325biological_processchromatin organization
E0030527molecular_functionstructural constituent of chromatin
E0031298cellular_componentreplication fork protection complex
E0031492molecular_functionnucleosomal DNA binding
E0031507biological_processheterochromatin formation
E0032991cellular_componentprotein-containing complex
E0046982molecular_functionprotein heterodimerization activity
F0000122biological_processnegative regulation of transcription by RNA polymerase II
F0000786cellular_componentnucleosome
F0003677molecular_functionDNA binding
F0005515molecular_functionprotein binding
F0005634cellular_componentnucleus
F0005694cellular_componentchromosome
F0006281biological_processDNA repair
F0006325biological_processchromatin organization
F0030527molecular_functionstructural constituent of chromatin
F0031298cellular_componentreplication fork protection complex
F0031492molecular_functionnucleosomal DNA binding
F0031507biological_processheterochromatin formation
F0032991cellular_componentprotein-containing complex
F0046982molecular_functionprotein heterodimerization activity
G0000122biological_processnegative regulation of transcription by RNA polymerase II
G0000786cellular_componentnucleosome
G0003677molecular_functionDNA binding
G0005515molecular_functionprotein binding
G0005634cellular_componentnucleus
G0005694cellular_componentchromosome
G0006301biological_processpostreplication repair
G0006325biological_processchromatin organization
G0006355biological_processregulation of DNA-templated transcription
G0030527molecular_functionstructural constituent of chromatin
G0031298cellular_componentreplication fork protection complex
G0032991cellular_componentprotein-containing complex
G0046982molecular_functionprotein heterodimerization activity
H0000122biological_processnegative regulation of transcription by RNA polymerase II
H0000786cellular_componentnucleosome
H0003677molecular_functionDNA binding
H0005515molecular_functionprotein binding
H0005634cellular_componentnucleus
H0005694cellular_componentchromosome
H0006301biological_processpostreplication repair
H0006325biological_processchromatin organization
H0006355biological_processregulation of DNA-templated transcription
H0030527molecular_functionstructural constituent of chromatin
H0031298cellular_componentreplication fork protection complex
H0032991cellular_componentprotein-containing complex
H0046982molecular_functionprotein heterodimerization activity
M0000725biological_processrecombinational repair
M0000785cellular_componentchromatin
M0000812cellular_componentSwr1 complex
M0003677molecular_functionDNA binding
M0004386molecular_functionhelicase activity
M0005198molecular_functionstructural molecule activity
M0005515molecular_functionprotein binding
M0005524molecular_functionATP binding
M0005634cellular_componentnucleus
M0005829cellular_componentcytosol
M0006325biological_processchromatin organization
M0006338biological_processchromatin remodeling
M0006355biological_processregulation of DNA-templated transcription
M0016787molecular_functionhydrolase activity
M0016887molecular_functionATP hydrolysis activity
M0042393molecular_functionhistone binding
M0060090molecular_functionmolecular adaptor activity
M0140658molecular_functionATP-dependent chromatin remodeler activity
R0000785cellular_componentchromatin
R0000812cellular_componentSwr1 complex
R0005515molecular_functionprotein binding
R0005634cellular_componentnucleus
R0005737cellular_componentcytoplasm
R0006325biological_processchromatin organization
R0006338biological_processchromatin remodeling
R0006355biological_processregulation of DNA-templated transcription
R0031491molecular_functionnucleosome binding
R0034399cellular_componentnuclear periphery
R0043232cellular_componentintracellular non-membrane-bounded organelle
S0000785cellular_componentchromatin
S0000812cellular_componentSwr1 complex
S0005515molecular_functionprotein binding
S0005634cellular_componentnucleus
S0006325biological_processchromatin organization
S0006338biological_processchromatin remodeling
S0006355biological_processregulation of DNA-templated transcription
S0006623biological_processprotein targeting to vacuole
S0008270molecular_functionzinc ion binding
S0031491molecular_functionnucleosome binding
S0046872molecular_functionmetal ion binding
T0000492biological_processbox C/D snoRNP assembly
T0000785cellular_componentchromatin
T0000812cellular_componentSwr1 complex
T0003678molecular_functionDNA helicase activity
T0004386molecular_functionhelicase activity
T0005515molecular_functionprotein binding
T0005524molecular_functionATP binding
T0005634cellular_componentnucleus
T0006281biological_processDNA repair
T0006325biological_processchromatin organization
T0006338biological_processchromatin remodeling
T0006355biological_processregulation of DNA-templated transcription
T0006357biological_processregulation of transcription by RNA polymerase II
T0008094molecular_functionATP-dependent activity, acting on DNA
T0016787molecular_functionhydrolase activity
T0016887molecular_functionATP hydrolysis activity
T0031011cellular_componentIno80 complex
T0032508biological_processDNA duplex unwinding
T0035267cellular_componentNuA4 histone acetyltransferase complex
T0043138molecular_function3'-5' DNA helicase activity
T0043139molecular_function5'-3' DNA helicase activity
T0050821biological_processprotein stabilization
T0097255cellular_componentR2TP complex
U0000492biological_processbox C/D snoRNP assembly
U0000785cellular_componentchromatin
U0000812cellular_componentSwr1 complex
U0003678molecular_functionDNA helicase activity
U0004386molecular_functionhelicase activity
U0005515molecular_functionprotein binding
U0005524molecular_functionATP binding
U0005634cellular_componentnucleus
U0005654cellular_componentnucleoplasm
U0006281biological_processDNA repair
U0006325biological_processchromatin organization
U0006338biological_processchromatin remodeling
U0006355biological_processregulation of DNA-templated transcription
U0006357biological_processregulation of transcription by RNA polymerase II
U0006364biological_processrRNA processing
U0008094molecular_functionATP-dependent activity, acting on DNA
U0016787molecular_functionhydrolase activity
U0016887molecular_functionATP hydrolysis activity
U0031011cellular_componentIno80 complex
U0032508biological_processDNA duplex unwinding
U0035267cellular_componentNuA4 histone acetyltransferase complex
U0043138molecular_function3'-5' DNA helicase activity
U0043139molecular_function5'-3' DNA helicase activity
U0050821biological_processprotein stabilization
U0097255cellular_componentR2TP complex
V0000492biological_processbox C/D snoRNP assembly
V0000785cellular_componentchromatin
V0000812cellular_componentSwr1 complex
V0003678molecular_functionDNA helicase activity
V0004386molecular_functionhelicase activity
V0005515molecular_functionprotein binding
V0005524molecular_functionATP binding
V0005634cellular_componentnucleus
V0006281biological_processDNA repair
V0006325biological_processchromatin organization
V0006338biological_processchromatin remodeling
V0006355biological_processregulation of DNA-templated transcription
V0006357biological_processregulation of transcription by RNA polymerase II
V0008094molecular_functionATP-dependent activity, acting on DNA
V0016787molecular_functionhydrolase activity
V0016887molecular_functionATP hydrolysis activity
V0031011cellular_componentIno80 complex
V0032508biological_processDNA duplex unwinding
V0035267cellular_componentNuA4 histone acetyltransferase complex
V0043138molecular_function3'-5' DNA helicase activity
V0043139molecular_function5'-3' DNA helicase activity
V0050821biological_processprotein stabilization
V0097255cellular_componentR2TP complex
W0000492biological_processbox C/D snoRNP assembly
W0000785cellular_componentchromatin
W0000812cellular_componentSwr1 complex
W0003678molecular_functionDNA helicase activity
W0004386molecular_functionhelicase activity
W0005515molecular_functionprotein binding
W0005524molecular_functionATP binding
W0005634cellular_componentnucleus
W0005654cellular_componentnucleoplasm
W0006281biological_processDNA repair
W0006325biological_processchromatin organization
W0006338biological_processchromatin remodeling
W0006355biological_processregulation of DNA-templated transcription
W0006357biological_processregulation of transcription by RNA polymerase II
W0006364biological_processrRNA processing
W0008094molecular_functionATP-dependent activity, acting on DNA
W0016787molecular_functionhydrolase activity
W0016887molecular_functionATP hydrolysis activity
W0031011cellular_componentIno80 complex
W0032508biological_processDNA duplex unwinding
W0035267cellular_componentNuA4 histone acetyltransferase complex
W0043138molecular_function3'-5' DNA helicase activity
W0043139molecular_function5'-3' DNA helicase activity
W0050821biological_processprotein stabilization
W0097255cellular_componentR2TP complex
X0000492biological_processbox C/D snoRNP assembly
X0000785cellular_componentchromatin
X0000812cellular_componentSwr1 complex
X0003678molecular_functionDNA helicase activity
X0004386molecular_functionhelicase activity
X0005515molecular_functionprotein binding
X0005524molecular_functionATP binding
X0005634cellular_componentnucleus
X0006281biological_processDNA repair
X0006325biological_processchromatin organization
X0006338biological_processchromatin remodeling
X0006355biological_processregulation of DNA-templated transcription
X0006357biological_processregulation of transcription by RNA polymerase II
X0008094molecular_functionATP-dependent activity, acting on DNA
X0016787molecular_functionhydrolase activity
X0016887molecular_functionATP hydrolysis activity
X0031011cellular_componentIno80 complex
X0032508biological_processDNA duplex unwinding
X0035267cellular_componentNuA4 histone acetyltransferase complex
X0043138molecular_function3'-5' DNA helicase activity
X0043139molecular_function5'-3' DNA helicase activity
X0050821biological_processprotein stabilization
X0097255cellular_componentR2TP complex
Y0000492biological_processbox C/D snoRNP assembly
Y0000785cellular_componentchromatin
Y0000812cellular_componentSwr1 complex
Y0003678molecular_functionDNA helicase activity
Y0004386molecular_functionhelicase activity
Y0005515molecular_functionprotein binding
Y0005524molecular_functionATP binding
Y0005634cellular_componentnucleus
Y0005654cellular_componentnucleoplasm
Y0006281biological_processDNA repair
Y0006325biological_processchromatin organization
Y0006338biological_processchromatin remodeling
Y0006355biological_processregulation of DNA-templated transcription
Y0006357biological_processregulation of transcription by RNA polymerase II
Y0006364biological_processrRNA processing
Y0008094molecular_functionATP-dependent activity, acting on DNA
Y0016787molecular_functionhydrolase activity
Y0016887molecular_functionATP hydrolysis activity
Y0031011cellular_componentIno80 complex
Y0032508biological_processDNA duplex unwinding
Y0035267cellular_componentNuA4 histone acetyltransferase complex
Y0043138molecular_function3'-5' DNA helicase activity
Y0043139molecular_function5'-3' DNA helicase activity
Y0050821biological_processprotein stabilization
Y0097255cellular_componentR2TP complex
Functional Information from PDB Data
site_idAC1
Number of Residues14
Detailsbinding site for residue ADP M 1601
ChainResidue
MASN695
MASN1329
MARG1357
MILE1358
MBEF1602
MMG1603
MLEU696
MGLN700
MGLY724
MLEU725
MGLY726
MLYS727
MTHR728
MILE729

site_idAC2
Number of Residues6
Detailsbinding site for residue BEF M 1602
ChainResidue
MMET723
MLYS727
MARG1354
MARG1357
MADP1601
MMG1603

site_idAC3
Number of Residues3
Detailsbinding site for residue MG M 1603
ChainResidue
MASP824
MADP1601
MBEF1602

site_idAC4
Number of Residues14
Detailsbinding site for residue ADP R 501
ChainResidue
RGLY11
RSER12
RTYR13
RGLU14
RLYS16
RPHE195
RASN246
RLYS249
RGLU250
RGLY358
RASN361
RLEU362
RBEF502
RMG503

site_idAC5
Number of Residues6
Detailsbinding site for residue BEF R 502
ChainResidue
RSER12
RGLY194
RPHE195
RASN196
RADP501
RMG503

site_idAC6
Number of Residues2
Detailsbinding site for residue MG R 503
ChainResidue
RADP501
RBEF502

site_idAC7
Number of Residues5
Detailsbinding site for residue ZN S 501
ChainResidue
SCYS244
SILE246
SCYS247
SCYS264
SCYS268

site_idAC8
Number of Residues4
Detailsbinding site for residue ZN S 502
ChainResidue
SCYS256
SCYS259
SHIS272
SCYS277

site_idAC9
Number of Residues17
Detailsbinding site for residue ADP T 501
ChainResidue
TALA26
THIS29
TGLY47
TPHE48
TVAL49
TGLY80
TPRO81
TSER82
TTHR83
TGLY84
TLYS85
TTHR86
TALA87
TTYR375
TARG413
UGLU314
UMG501

site_idAD1
Number of Residues4
Detailsbinding site for residue MG U 501
ChainResidue
TADP501
UASN310
UGLU314
UARG350

site_idAD2
Number of Residues13
Detailsbinding site for residue ADP U 502
ChainResidue
UALA22
UHIS25
UVAL45
UPRO76
UPRO77
UTHR79
UGLY80
ULYS81
UTHR82
UTYR359
UILE367
UMG503
VGLU329

site_idAD3
Number of Residues3
Detailsbinding site for residue MG U 503
ChainResidue
UTHR82
UGLU297
UADP502

site_idAD4
Number of Residues17
Detailsbinding site for residue ADP V 501
ChainResidue
VTHR83
VGLY84
VLYS85
VTHR86
VALA87
VTYR375
VARG413
VMG502
WGLU314
VALA26
VHIS29
VGLY47
VPHE48
VVAL49
VGLY80
VPRO81
VSER82

site_idAD5
Number of Residues2
Detailsbinding site for residue MG V 502
ChainResidue
VTHR86
VADP501

site_idAD6
Number of Residues12
Detailsbinding site for residue ADP W 501
ChainResidue
WALA22
WHIS25
WGLY43
WVAL45
WPRO77
WTHR79
WGLY80
WLYS81
WTYR359
WILE367
WMG502
XARG366

site_idAD7
Number of Residues3
Detailsbinding site for residue MG W 502
ChainResidue
WTHR82
WGLU297
WADP501

site_idAD8
Number of Residues18
Detailsbinding site for residue ADP X 501
ChainResidue
XALA26
XHIS29
XGLY47
XPHE48
XGLY80
XPRO81
XSER82
XTHR83
XGLY84
XLYS85
XTHR86
XALA87
XILE383
XARG387
XARG413
XLEU416
YGLU314
YMG501

site_idAD9
Number of Residues3
Detailsbinding site for residue MG Y 501
ChainResidue
XTHR86
XADP501
YGLU314

site_idAE1
Number of Residues11
Detailsbinding site for residue ADP Y 502
ChainResidue
TGLU329
YVAL45
YPRO77
YSER78
YGLY80
YASN326
YTYR359
YILE367
YLEU396
YARG397
YMG503

site_idAE2
Number of Residues3
Detailsbinding site for residue MG Y 503
ChainResidue
YGLU297
YASN326
YADP502

Functional Information from PROSITE/UniProt
site_idPS00014
Number of Residues4
DetailsER_TARGET Endoplasmic reticulum targeting sequence. SQEL
ChainResidueDetails
ESER128-LEU131

site_idPS00046
Number of Residues7
DetailsHISTONE_H2A Histone H2A signature. AGLtFPV
ChainResidueDetails
EALA22-VAL28

site_idPS00047
Number of Residues5
DetailsHISTONE_H4 Histone H4 signature. GAKRH
ChainResidueDetails
CGLY14-HIS18

site_idPS00322
Number of Residues7
DetailsHISTONE_H3_1 Histone H3 signature 1. KAPRKQL
ChainResidueDetails
ALYS14-LEU20

site_idPS00357
Number of Residues23
DetailsHISTONE_H2B Histone H2B signature. REIQTavRlILpGELaKHAVSEG
ChainResidueDetails
GARG95-GLY117

site_idPS00959
Number of Residues9
DetailsHISTONE_H3_2 Histone H3 signature 2. PFqRLVREI
ChainResidueDetails
APRO66-ILE74

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues3
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
UGLY75
WGLY75
YGLY75
HLYS7

site_idSWS_FT_FI2
Number of Residues3
DetailsMOD_RES: N-acetylvaline => ECO:0000269|PubMed:15525518
ChainResidueDetails
TVAL2
VVAL2
XVAL2
SCYS259
SCYS264
SCYS268
SHIS272
SCYS277

site_idSWS_FT_FI3
Number of Residues2
DetailsMOD_RES: N6-acetyllysine => ECO:0000269|PubMed:11545749, ECO:0000269|PubMed:15186774
ChainResidueDetails
GLYS11
HLYS11

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: N6-acetyllysine; alternate => ECO:0000269|PubMed:11545749, ECO:0000269|PubMed:15186774, ECO:0000269|PubMed:16598039, ECO:0000269|PubMed:19113941
ChainResidueDetails
GLYS16
HLYS16
DLYS31
DLYS77

site_idSWS_FT_FI5
Number of Residues2
DetailsMOD_RES: N6-acetyllysine; alternate => ECO:0000269|PubMed:19113941
ChainResidueDetails
GLYS17
HLYS17
FLYS13
FLYS21

site_idSWS_FT_FI6
Number of Residues2
DetailsMOD_RES: N6-butyryllysine; alternate => ECO:0000269|PubMed:19113941
ChainResidueDetails
GLYS21
HLYS21

site_idSWS_FT_FI7
Number of Residues2
DetailsMOD_RES: N6-methyllysine; alternate => ECO:0000269|PubMed:19113941
ChainResidueDetails
GLYS22
HLYS22

site_idSWS_FT_FI8
Number of Residues4
DetailsMOD_RES: N6-succinyllysine => ECO:0000269|PubMed:22389435
ChainResidueDetails
GLYS34
GLYS46
HLYS34
HLYS46

site_idSWS_FT_FI9
Number of Residues2
DetailsMOD_RES: N6,N6-dimethyllysine => ECO:0000269|PubMed:19113941
ChainResidueDetails
GLYS37
HLYS37
FLYS126

site_idSWS_FT_FI10
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO); alternate
ChainResidueDetails
GLYS6
GLYS7
HLYS6
HLYS7

site_idSWS_FT_FI11
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in ubiquitin) => ECO:0000269|PubMed:10642555, ECO:0000269|PubMed:12535538, ECO:0000269|PubMed:12535539, ECO:0000269|PubMed:14660635, ECO:0000269|PubMed:15280549, ECO:0000269|PubMed:16432255
ChainResidueDetails
GLYS123
HLYS123

site_idSWS_FT_FI12
Number of Residues4
DetailsCROSSLNK: Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO); alternate => ECO:0000305
ChainResidueDetails
GLYS16
GLYS17
HLYS16
HLYS17

222415

PDB entries from 2024-07-10

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