6GDA
Cytochrome c in complex with Sulfonato-calix[8]arene, P43212 form soaked with Spermine
Functional Information from GO Data
| Chain | GOid | namespace | contents |
| A | 0005515 | molecular_function | protein binding |
| A | 0005739 | cellular_component | mitochondrion |
| A | 0005758 | cellular_component | mitochondrial intermembrane space |
| A | 0006122 | biological_process | mitochondrial electron transport, ubiquinol to cytochrome c |
| A | 0006123 | biological_process | mitochondrial electron transport, cytochrome c to oxygen |
| A | 0009055 | molecular_function | electron transfer activity |
| A | 0020037 | molecular_function | heme binding |
| A | 0022904 | biological_process | respiratory electron transport chain |
| A | 0046872 | molecular_function | metal ion binding |
| A | 1901612 | molecular_function | cardiolipin binding |
Functional Information from PDB Data
| site_id | AC1 |
| Number of Residues | 21 |
| Details | binding site for residue HEC A 201 |
| Chain | Residue |
| A | ARG13 |
| A | TYR48 |
| A | THR49 |
| A | ASN52 |
| A | TRP59 |
| A | MET64 |
| A | TYR67 |
| A | LEU68 |
| A | THR78 |
| A | LYS79 |
| A | MET80 |
| A | CYS14 |
| A | PHE82 |
| A | HOH303 |
| A | CYS17 |
| A | HIS18 |
| A | GLY29 |
| A | ILE35 |
| A | SER40 |
| A | GLY41 |
| A | TYR46 |
| site_id | AC2 |
| Number of Residues | 17 |
| Details | binding site for residue EVB A 202 |
| Chain | Residue |
| A | LYS11 |
| A | THR12 |
| A | LEU15 |
| A | GLN16 |
| A | THR19 |
| A | GLU21 |
| A | PRO25 |
| A | HIS26 |
| A | LYS27 |
| A | HIS39 |
| A | GLY41 |
| A | GLN42 |
| A | TYR46 |
| A | TYR48 |
| A | ILE53 |
| A | LYS54 |
| A | ASN56 |
| site_id | AC3 |
| Number of Residues | 12 |
| Details | binding site for residue EVB A 203 |
| Chain | Residue |
| A | ALA-1 |
| A | ALA3 |
| A | LYS4 |
| A | LYS4 |
| A | LYS5 |
| A | ALA7 |
| A | THR8 |
| A | THR96 |
| A | TYR97 |
| A | LYS100 |
| A | SPM214 |
| A | SPM215 |
| site_id | AC4 |
| Number of Residues | 10 |
| Details | binding site for residue EVB A 204 |
| Chain | Residue |
| A | ARG13 |
| A | ASN70 |
| A | LYS72 |
| A | LYS73 |
| A | PRO76 |
| A | PHE82 |
| A | GLY83 |
| A | GLY84 |
| A | LEU85 |
| A | LYS86 |
| site_id | AC5 |
| Number of Residues | 3 |
| Details | binding site for residue SO4 A 205 |
| Chain | Residue |
| A | THR49 |
| A | ASP50 |
| A | HOH304 |
| site_id | AC6 |
| Number of Residues | 2 |
| Details | binding site for residue SO4 A 206 |
| Chain | Residue |
| A | LYS22 |
| A | HIS33 |
| site_id | AC7 |
| Number of Residues | 1 |
| Details | binding site for residue SO4 A 207 |
| Chain | Residue |
| A | ARG38 |
| site_id | AC8 |
| Number of Residues | 2 |
| Details | binding site for residue SO4 A 208 |
| Chain | Residue |
| A | GLU44 |
| A | GLY45 |
| site_id | AC9 |
| Number of Residues | 4 |
| Details | binding site for residue SO4 A 209 |
| Chain | Residue |
| A | LYS86 |
| A | LYS87 |
| A | GLU88 |
| A | SO4211 |
| site_id | AD1 |
| Number of Residues | 1 |
| Details | binding site for residue SO4 A 210 |
| Chain | Residue |
| A | LYS55 |
| site_id | AD2 |
| Number of Residues | 5 |
| Details | binding site for residue SO4 A 211 |
| Chain | Residue |
| A | GLU-4 |
| A | ALA-5 |
| A | GLU88 |
| A | ARG91 |
| A | SO4209 |
| site_id | AD3 |
| Number of Residues | 1 |
| Details | binding site for residue SO4 A 212 |
| Chain | Residue |
| A | SPM214 |
| site_id | AD4 |
| Number of Residues | 1 |
| Details | binding site for residue SO4 A 213 |
| Chain | Residue |
| A | SPM215 |
| site_id | AD5 |
| Number of Residues | 2 |
| Details | binding site for residue SPM A 214 |
| Chain | Residue |
| A | EVB203 |
| A | SO4212 |
| site_id | AD6 |
| Number of Residues | 2 |
| Details | binding site for residue SPM A 215 |
| Chain | Residue |
| A | EVB203 |
| A | SO4213 |
Functional Information from SwissProt/UniProt
| site_id | SWS_FT_FI1 |
| Number of Residues | 2 |
| Details | Binding site: {"description":"covalent","evidences":[{"source":"PubMed","id":"11880631","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18390544","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1KYO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3CX5","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI2 |
| Number of Residues | 2 |
| Details | Binding site: {"description":"axial binding residue","evidences":[{"source":"PubMed","id":"11880631","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18390544","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1KYO","evidenceCode":"ECO:0007744"},{"source":"PDB","id":"3CX5","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI3 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"N6,N6,N6-trimethyllysine; by CTM1","evidences":[{"source":"PubMed","id":"10791961","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"11880631","evidenceCode":"ECO:0000269"},{"source":"PDB","id":"1KYO","evidenceCode":"ECO:0007744"}]} |
| Chain | Residue | Details |
| site_id | SWS_FT_FI4 |
| Number of Residues | 1 |
| Details | Modified residue: {"description":"N6,N6,N6-trimethyllysine","evidences":[{"source":"PubMed","id":"10821864","evidenceCode":"ECO:0000269"},{"source":"PubMed","id":"18390544","evidenceCode":"ECO:0000269"}]} |
| Chain | Residue | Details |
