6G56
Apo-structure of the alanine racemase from Staphylococcus aureus
Functional Information from GO Data
Chain | GOid | namespace | contents |
A | 0003824 | molecular_function | catalytic activity |
A | 0005829 | cellular_component | cytosol |
A | 0006522 | biological_process | alanine metabolic process |
A | 0008784 | molecular_function | alanine racemase activity |
A | 0009252 | biological_process | peptidoglycan biosynthetic process |
A | 0016853 | molecular_function | isomerase activity |
A | 0030170 | molecular_function | pyridoxal phosphate binding |
A | 0030632 | biological_process | D-alanine biosynthetic process |
B | 0003824 | molecular_function | catalytic activity |
B | 0005829 | cellular_component | cytosol |
B | 0006522 | biological_process | alanine metabolic process |
B | 0008784 | molecular_function | alanine racemase activity |
B | 0009252 | biological_process | peptidoglycan biosynthetic process |
B | 0016853 | molecular_function | isomerase activity |
B | 0030170 | molecular_function | pyridoxal phosphate binding |
B | 0030632 | biological_process | D-alanine biosynthetic process |
Functional Information from PDB Data
site_id | AC1 |
Number of Residues | 7 |
Details | binding site for residue SO4 A 401 |
Chain | Residue |
A | TYR43 |
A | ASN203 |
A | SER204 |
A | GLY221 |
A | ILE222 |
A | TYR354 |
A | HOH536 |
site_id | AC2 |
Number of Residues | 7 |
Details | binding site for residue SO4 A 402 |
Chain | Residue |
A | ASN31 |
A | LYS32 |
A | ASP211 |
A | GLN213 |
A | HOH621 |
A | HIS29 |
A | PRO30 |
site_id | AC3 |
Number of Residues | 7 |
Details | binding site for residue SO4 A 403 |
Chain | Residue |
A | TYR228 |
A | GLN234 |
A | HIS240 |
A | LEU241 |
A | ARG336 |
A | HOH561 |
A | HOH580 |
site_id | AC4 |
Number of Residues | 6 |
Details | binding site for residue SO4 A 404 |
Chain | Residue |
A | TYR183 |
A | LYS187 |
A | CYS212 |
A | GLN213 |
A | PHE214 |
A | HOH502 |
site_id | AC5 |
Number of Residues | 4 |
Details | binding site for residue SO4 A 405 |
Chain | Residue |
A | LYS23 |
A | GLN184 |
A | LYS187 |
A | HOH550 |
site_id | AC6 |
Number of Residues | 4 |
Details | binding site for residue SO4 A 406 |
Chain | Residue |
A | SER107 |
A | LYS108 |
A | GLN109 |
B | HOH608 |
site_id | AC7 |
Number of Residues | 7 |
Details | binding site for residue SO4 A 407 |
Chain | Residue |
A | SER264 |
A | GLY266 |
A | HOH510 |
B | ARG138 |
B | HIS168 |
B | PHE169 |
B | CYS171 |
site_id | AC8 |
Number of Residues | 4 |
Details | binding site for residue SO4 A 408 |
Chain | Residue |
A | ASN16 |
A | ALA19 |
A | HIS53 |
A | ASN57 |
site_id | AC9 |
Number of Residues | 7 |
Details | binding site for residue GOL A 409 |
Chain | Residue |
A | CYS311 |
A | MET312 |
A | ASP313 |
A | GLN314 |
B | LYS39 |
B | ARG138 |
B | GOL418 |
site_id | AD1 |
Number of Residues | 8 |
Details | binding site for residue SO4 B 401 |
Chain | Residue |
B | TYR43 |
B | ASN203 |
B | SER204 |
B | GLY221 |
B | ILE222 |
B | TYR354 |
B | HOH507 |
B | HOH578 |
site_id | AD2 |
Number of Residues | 7 |
Details | binding site for residue SO4 B 402 |
Chain | Residue |
B | TYR228 |
B | GLN234 |
B | HIS240 |
B | LEU241 |
B | ARG336 |
B | HOH532 |
B | HOH561 |
site_id | AD3 |
Number of Residues | 5 |
Details | binding site for residue SO4 B 403 |
Chain | Residue |
B | TYR183 |
B | LYS187 |
B | CYS212 |
B | GLN213 |
B | PHE214 |
site_id | AD4 |
Number of Residues | 3 |
Details | binding site for residue SO4 B 404 |
Chain | Residue |
B | ASP143 |
B | THR144 |
B | ARG185 |
site_id | AD5 |
Number of Residues | 2 |
Details | binding site for residue SO4 B 405 |
Chain | Residue |
B | GLN184 |
B | LYS187 |
site_id | AD6 |
Number of Residues | 5 |
Details | binding site for residue SO4 B 406 |
Chain | Residue |
A | ARG74 |
A | HIS99 |
A | HOH600 |
B | GLU149 |
B | GLU152 |
site_id | AD7 |
Number of Residues | 5 |
Details | binding site for residue SO4 B 407 |
Chain | Residue |
A | ARG100 |
A | LYS124 |
B | LYS108 |
B | LYS112 |
B | GLU149 |
site_id | AD8 |
Number of Residues | 3 |
Details | binding site for residue SO4 B 408 |
Chain | Residue |
B | LYS142 |
B | ASP143 |
B | THR146 |
site_id | AD9 |
Number of Residues | 4 |
Details | binding site for residue SO4 B 409 |
Chain | Residue |
A | LYS116 |
B | MET210 |
B | ASP211 |
B | CYS212 |
site_id | AE1 |
Number of Residues | 8 |
Details | binding site for residue SO4 B 410 |
Chain | Residue |
B | ASN31 |
B | LYS32 |
B | GLN213 |
B | HOH509 |
A | LYS108 |
A | LYS112 |
B | HIS29 |
B | PRO30 |
site_id | AE2 |
Number of Residues | 4 |
Details | binding site for residue SO4 B 411 |
Chain | Residue |
B | ASN16 |
B | ALA19 |
B | HIS53 |
B | ASN57 |
site_id | AE3 |
Number of Residues | 3 |
Details | binding site for residue SO4 B 412 |
Chain | Residue |
B | LYS49 |
B | ARG52 |
B | HIS76 |
site_id | AE4 |
Number of Residues | 3 |
Details | binding site for residue SO4 B 413 |
Chain | Residue |
B | ARG74 |
B | HIS99 |
B | ARG100 |
site_id | AE5 |
Number of Residues | 2 |
Details | binding site for residue SO4 B 414 |
Chain | Residue |
B | LYS124 |
B | LYS125 |
site_id | AE6 |
Number of Residues | 5 |
Details | binding site for residue SO4 B 415 |
Chain | Residue |
A | GLU197 |
B | TYR157 |
B | GLU158 |
B | GLN159 |
B | HOH571 |
site_id | AE7 |
Number of Residues | 3 |
Details | binding site for residue SO4 B 416 |
Chain | Residue |
B | GLU174 |
B | SER230 |
B | GLU231 |
site_id | AE8 |
Number of Residues | 6 |
Details | binding site for residue GOL B 417 |
Chain | Residue |
A | LYS39 |
B | TYR265 |
B | CYS311 |
B | MET312 |
B | ASP313 |
B | HOH580 |
site_id | AE9 |
Number of Residues | 8 |
Details | binding site for residue GOL B 418 |
Chain | Residue |
A | GOL409 |
B | ARG138 |
B | PHE166 |
B | HIS168 |
B | ASN203 |
B | ARG219 |
B | HOH501 |
B | HOH550 |
Functional Information from PROSITE/UniProt
site_id | PS00395 |
Number of Residues | 11 |
Details | ALANINE_RACEMASE Alanine racemase pyridoxal-phosphate attachment site. AVvKANAYGLG |
Chain | Residue | Details |
A | ALA36-GLY46 |
Functional Information from SwissProt/UniProt
site_id | SWS_FT_FI1 |
Number of Residues | 2 |
Details | ACT_SITE: Proton acceptor; specific for D-alanine => ECO:0000305|PubMed:22194336 |
Chain | Residue | Details |
A | LYS39 | |
B | LYS39 |
site_id | SWS_FT_FI2 |
Number of Residues | 2 |
Details | ACT_SITE: Proton acceptor; specific for L-alanine => ECO:0000305|PubMed:22194336 |
Chain | Residue | Details |
A | TYR265 | |
B | TYR265 |
site_id | SWS_FT_FI3 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000255|HAMAP-Rule:MF_01201 |
Chain | Residue | Details |
A | ARG138 | |
B | ARG138 |
site_id | SWS_FT_FI4 |
Number of Residues | 2 |
Details | BINDING: BINDING => ECO:0000305 |
Chain | Residue | Details |
A | MET312 | |
B | MET312 |
site_id | SWS_FT_FI5 |
Number of Residues | 2 |
Details | MOD_RES: N6-(pyridoxal phosphate)lysine |
Chain | Residue | Details |
A | LYS39 | |
B | LYS39 |