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6G1Z

Crystal structure of a fluorescence optimized bathy phytochrome PAiRFP2 derived from wild-type Agp2 in its Pfr state.

Functional Information from GO Data
ChainGOidnamespacecontents
A0006355biological_processregulation of DNA-templated transcription
A0009584biological_processdetection of visible light
B0006355biological_processregulation of DNA-templated transcription
B0009584biological_processdetection of visible light
Functional Information from PDB Data
site_idAC1
Number of Residues22
Detailsbinding site for residue EL5 A 601
ChainResidue
ACYS13
APHE244
AHIS248
ATYR251
AVAL276
AHIS278
ALEU457
ASER462
AHOH723
AHOH744
AHOH758
AASP14
AHOH764
AHOH841
AHOH861
ATYR165
APHE192
AASP196
AILE197
APRO198
ATYR205
AARG211

site_idAC2
Number of Residues6
Detailsbinding site for residue SO4 A 602
ChainResidue
ASER141
AGLU143
AARG311
AARG349
AHOH778
AHOH808

site_idAC3
Number of Residues8
Detailsbinding site for residue SO4 A 603
ChainResidue
ALYS180
APRO182
APRO372
AHIS373
AHOH730
AHOH853
AHOH882
AHOH945

site_idAC4
Number of Residues4
Detailsbinding site for residue SO4 A 604
ChainResidue
AARG166
ATRP272
ALYS308
AHOH1011

site_idAC5
Number of Residues9
Detailsbinding site for residue SO4 A 605
ChainResidue
AARG328
AARG328
AARG328
AHIS332
AHIS332
AHIS332
AHOH829
AHOH829
AHOH829

site_idAC6
Number of Residues3
Detailsbinding site for residue SO4 A 606
ChainResidue
APRO377
AARG381
AHOH780

site_idAC7
Number of Residues5
Detailsbinding site for residue SO4 A 607
ChainResidue
AGLY67
ALYS68
AARG69
ASER96
AHOH1009

site_idAC8
Number of Residues5
Detailsbinding site for residue GOL A 608
ChainResidue
AALA348
ACYS353
AHIS367
AGLY368
AHOH931

site_idAC9
Number of Residues8
Detailsbinding site for residue GOL A 609
ChainResidue
ALEU340
AILE419
ASER420
AASP425
AALA496
AMET503
AHOH701
AHOH987

site_idAD1
Number of Residues4
Detailsbinding site for residue PEG A 610
ChainResidue
AALA331
AARG333
AHIS498
ALEU502

site_idAD2
Number of Residues9
Detailsbinding site for residue ETE A 611
ChainResidue
ATYR23
APRO26
AASP215
AALA216
AGLY218
AASN243
APHE244
AHOH831
AHOH1038

site_idAD3
Number of Residues9
Detailsbinding site for residue SO4 B 602
ChainResidue
BARG328
BARG328
BARG328
BHIS332
BHIS332
BHIS332
BHOH867
BHOH867
BHOH867

site_idAD4
Number of Residues6
Detailsbinding site for residue SO4 B 603
ChainResidue
BSER141
BGLU143
BARG349
BHOH772
BHOH777
BHOH1005

site_idAD5
Number of Residues7
Detailsbinding site for residue SO4 B 604
ChainResidue
BPRO182
BPRO372
BHIS373
BHOH706
BHOH806
BHOH887
BLYS180

site_idAD6
Number of Residues5
Detailsbinding site for residue SO4 B 605
ChainResidue
BVAL142
BARG166
BTRP272
BLYS308
BHOH994

site_idAD7
Number of Residues2
Detailsbinding site for residue SO4 B 606
ChainResidue
BARG283
BHOH884

site_idAD8
Number of Residues4
Detailsbinding site for residue SO4 B 607
ChainResidue
ATHR85
ATYR108
BASP5
BHOH764

site_idAD9
Number of Residues3
Detailsbinding site for residue SO4 B 608
ChainResidue
BHIS332
BHIS332
BHIS332

site_idAE1
Number of Residues5
Detailsbinding site for residue SO4 B 609
ChainResidue
BARG312
BSER478
BGLU479
BALA480
BHOH808

site_idAE2
Number of Residues9
Detailsbinding site for residue GOL B 610
ChainResidue
BLEU340
BILE419
BASP425
BALA496
BMET503
BHOH707
BHOH726
BHOH746
BHOH866

site_idAE3
Number of Residues5
Detailsbinding site for residue GOL B 611
ChainResidue
BALA348
BCYS353
BASP354
BHIS367
BGLY368

site_idAE4
Number of Residues3
Detailsbinding site for residue GOL B 612
ChainResidue
BARG328
BARG328
BARG328

site_idAE5
Number of Residues3
Detailsbinding site for residue GOL B 613
ChainResidue
BARG381
BHOH718
BHOH799

site_idAE6
Number of Residues2
Detailsbinding site for residue GOL B 614
ChainResidue
BARG166
BLYS174

site_idAE7
Number of Residues3
Detailsbinding site for residue PEG B 615
ChainResidue
ATHR11
BASP64
BGLY67

site_idAE8
Number of Residues3
Detailsbinding site for residue PG0 B 616
ChainResidue
BARG333
BHIS498
BLEU502

site_idAE9
Number of Residues6
Detailsbinding site for residue ETE B 617
ChainResidue
BTYR23
BGLY218
BPRO220
BASN243
BPHE244
BHOH937

site_idAF1
Number of Residues27
Detailsbinding site for Di-peptide EL5 B 601 and CYS B 13
ChainResidue
BVAL8
BASP9
BASN12
BASP14
BARG15
BGLU16
BTYR165
BPHE192
BASP196
BPRO198
BTYR205
BARG211
BSER245
BHIS248
BTYR251
BVAL276
BHIS278
BLEU457
BPRO459
BSER462
BHOH719
BHOH724
BHOH739
BHOH773
BHOH838
BHOH852
BHOH865

251422

PDB entries from 2026-04-01

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