Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

6FV1

Structure of human coronavirus NL63 main protease in complex with the alpha-ketoamide (S)-N-((S)-4-(benzylamino)-3,4-dioxo-1-((S)-2-oxopyrrolidin-3-yl)butan-2-yl)-2-cinnamamido-4-methylpentanamide (cinnamoyl-leucine-GlnLactam-CO-CO-NH-benzyl)

Functional Information from GO Data
ChainGOidnamespacecontents
A0008233molecular_functionpeptidase activity
A0019082biological_processviral protein processing
B0008233molecular_functionpeptidase activity
B0019082biological_processviral protein processing
C0008233molecular_functionpeptidase activity
C0019082biological_processviral protein processing
Functional Information from PDB Data
site_idAC1
Number of Residues16
Detailsbinding site for residue E8E A 401
ChainResidue
AVAL26
AILE165
AGLU166
APRO189
AHOH513
AHOH552
AHOH584
AHOH640
AHIS41
APHE139
AASN141
AGLY142
AALA143
ACYS144
AHIS163
AGLN164

site_idAC2
Number of Residues9
Detailsbinding site for residue GOL A 402
ChainResidue
ALYS5
AMET6
AGLN8
ASER110
APHE111
AASN112
AGLY126
AASN150
AGLU292

site_idAC3
Number of Residues3
Detailsbinding site for residue DMS A 403
ChainResidue
AASP202
ATYR248
AHOH578

site_idAC4
Number of Residues2
Detailsbinding site for residue DMS A 404
ChainResidue
AHIS100
AHOH714

site_idAC5
Number of Residues4
Detailsbinding site for residue SO4 A 405
ChainResidue
AARG130
ALYS136
AHOH617
AHOH629

site_idAC6
Number of Residues9
Detailsbinding site for residue GOL B 402
ChainResidue
BLYS5
BMET6
BGLN8
BSER110
BPHE111
BASN112
BGLY126
BASN150
BGLU292

site_idAC7
Number of Residues4
Detailsbinding site for residue GOL B 403
ChainResidue
AHOH548
BGLU166
BE8E401
BHOH556

site_idAC8
Number of Residues6
Detailsbinding site for residue GOL B 404
ChainResidue
ASER222
AHOH527
BARG40
BHOH535
BHOH540
BHOH566

site_idAC9
Number of Residues5
Detailsbinding site for residue GOL C 402
ChainResidue
BTYR117
BSER122
CLYS295
CGLY299
CHOH574

site_idAD1
Number of Residues9
Detailsbinding site for Ligand LEU B 269 bound to SER B 265
ChainResidue
BTRP219
BSER265
BILE266
BGLN267
BHIS268
BHIS270
BGLU271
BGLY272
BPHE273

site_idAD2
Number of Residues22
Detailsbinding site for Di-peptide E8E B 401 and CYS B 144
ChainResidue
AASN153
BVAL26
BLEU27
BASN28
BHIS41
BPHE139
BASN141
BGLY142
BALA143
BGLY145
BSER146
BHIS163
BGLN164
BILE165
BGLU166
BASP187
BGLN188
BPRO189
BGOL403
BHOH510
BHOH513
BHOH578

site_idAD3
Number of Residues19
Detailsbinding site for Di-peptide E8E C 401 and CYS C 144
ChainResidue
CHIS163
CGLN164
CILE165
CGLU166
CGLY168
CASP187
CSER190
CLEU191
CHOH571
CVAL26
CLEU27
CASN28
CHIS41
CPHE139
CASN141
CGLY142
CALA143
CGLY145
CSER146

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues6
DetailsACT_SITE: For 3CL-PRO activity => ECO:0000255|PROSITE-ProRule:PRU00772
ChainResidueDetails
AHIS41
ACYS144
BHIS41
BCYS144
CHIS41
CCYS144

227933

PDB entries from 2024-11-27

PDB statisticsPDBj update infoContact PDBjnumon