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6FDS

Crystal structure of T. brucei PDE-B1 catalytic domain with inhibitor NPD-226

Functional Information from GO Data
ChainGOidnamespacecontents
A0004114molecular_function3',5'-cyclic-nucleotide phosphodiesterase activity
A0007165biological_processsignal transduction
A0008081molecular_functionphosphoric diester hydrolase activity
B0004114molecular_function3',5'-cyclic-nucleotide phosphodiesterase activity
B0007165biological_processsignal transduction
B0008081molecular_functionphosphoric diester hydrolase activity
Functional Information from PDB Data
site_idAC1
Number of Residues5
Detailsbinding site for residue GAI A 1001
ChainResidue
AASP762
ALEU764
AGLU765
AARG769
AARG918

site_idAC2
Number of Residues8
Detailsbinding site for residue D5T A 1002
ChainResidue
AGLN874
AGLY876
APHE880
AHOH1174
AMET785
AALA837
AVAL840
AMET861

site_idAC3
Number of Residues6
Detailsbinding site for residue GAI A 1003
ChainResidue
ASER798
AALA799
AASP801
AGLN802
ASER804
APHE809

site_idAC4
Number of Residues3
Detailsbinding site for residue GAI A 1004
ChainResidue
AVAL610
AHOH1107
AHOH1173

site_idAC5
Number of Residues6
Detailsbinding site for residue ZN A 1005
ChainResidue
AHIS673
AHIS709
AASP710
AASP822
AHOH1133
AHOH1150

site_idAC6
Number of Residues6
Detailsbinding site for residue MG A 1006
ChainResidue
AASP710
AHOH1118
AHOH1133
AHOH1141
AHOH1169
AHOH1176

site_idAC7
Number of Residues3
Detailsbinding site for residue GAI A 1007
ChainResidue
ASER726
APRO727
ALEU728

site_idAC8
Number of Residues6
Detailsbinding site for residue MG B 1001
ChainResidue
BASP710
BHOH1119
BHOH1123
BHOH1138
BHOH1154
BHOH1158

site_idAC9
Number of Residues6
Detailsbinding site for residue ZN B 1002
ChainResidue
BHIS673
BHIS709
BASP710
BASP822
BHOH1123
BHOH1151

site_idAD1
Number of Residues2
Detailsbinding site for residue GOL B 1003
ChainResidue
BTYR691
BLEU694

site_idAD2
Number of Residues4
Detailsbinding site for residue GAI B 1004
ChainResidue
BASP762
BLEU764
BGLU765
BARG769

site_idAD3
Number of Residues4
Detailsbinding site for residue GAI B 1005
ChainResidue
BGLY688
BASN689
BGLY896
BHOH1156

site_idAD4
Number of Residues10
Detailsbinding site for residue D5T B 1006
ChainResidue
BHIS669
BMET785
BASP822
BASN825
BTRP836
BALA837
BMET861
BGLN874
BPHE877
BHOH1134

Functional Information from PROSITE/UniProt
site_idPS00126
Number of Residues12
DetailsPDEASE_I_1 3'5'-cyclic nucleotide phosphodiesterase domain signature. HDLdHmGlnNsF
ChainResidueDetails
AHIS709-PHE720

226707

PDB entries from 2024-10-30

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