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6F5V

Crystal structure of the prephenate aminotransferase from Arabidopsis thaliana

Functional Information from GO Data
ChainGOidnamespacecontents
A0003824molecular_functioncatalytic activity
A0004069molecular_functionL-aspartate:2-oxoglutarate aminotransferase activity
A0005829cellular_componentcytosol
A0008483molecular_functiontransaminase activity
A0008652biological_processamino acid biosynthetic process
A0009058biological_processbiosynthetic process
A0009094biological_processL-phenylalanine biosynthetic process
A0009095biological_processaromatic amino acid family biosynthetic process, prephenate pathway
A0009507cellular_componentchloroplast
A0009570cellular_componentchloroplast stroma
A0009793biological_processembryo development ending in seed dormancy
A0030170molecular_functionpyridoxal phosphate binding
A0033853molecular_functionaspartate-prephenate aminotransferase activity
A0033854molecular_functionglutamate-prephenate aminotransferase activity
B0003824molecular_functioncatalytic activity
B0004069molecular_functionL-aspartate:2-oxoglutarate aminotransferase activity
B0005829cellular_componentcytosol
B0008483molecular_functiontransaminase activity
B0008652biological_processamino acid biosynthetic process
B0009058biological_processbiosynthetic process
B0009094biological_processL-phenylalanine biosynthetic process
B0009095biological_processaromatic amino acid family biosynthetic process, prephenate pathway
B0009507cellular_componentchloroplast
B0009570cellular_componentchloroplast stroma
B0009793biological_processembryo development ending in seed dormancy
B0030170molecular_functionpyridoxal phosphate binding
B0033853molecular_functionaspartate-prephenate aminotransferase activity
B0033854molecular_functionglutamate-prephenate aminotransferase activity
C0003824molecular_functioncatalytic activity
C0004069molecular_functionL-aspartate:2-oxoglutarate aminotransferase activity
C0005829cellular_componentcytosol
C0008483molecular_functiontransaminase activity
C0008652biological_processamino acid biosynthetic process
C0009058biological_processbiosynthetic process
C0009094biological_processL-phenylalanine biosynthetic process
C0009095biological_processaromatic amino acid family biosynthetic process, prephenate pathway
C0009507cellular_componentchloroplast
C0009570cellular_componentchloroplast stroma
C0009793biological_processembryo development ending in seed dormancy
C0030170molecular_functionpyridoxal phosphate binding
C0033853molecular_functionaspartate-prephenate aminotransferase activity
C0033854molecular_functionglutamate-prephenate aminotransferase activity
D0003824molecular_functioncatalytic activity
D0004069molecular_functionL-aspartate:2-oxoglutarate aminotransferase activity
D0005829cellular_componentcytosol
D0008483molecular_functiontransaminase activity
D0008652biological_processamino acid biosynthetic process
D0009058biological_processbiosynthetic process
D0009094biological_processL-phenylalanine biosynthetic process
D0009095biological_processaromatic amino acid family biosynthetic process, prephenate pathway
D0009507cellular_componentchloroplast
D0009570cellular_componentchloroplast stroma
D0009793biological_processembryo development ending in seed dormancy
D0030170molecular_functionpyridoxal phosphate binding
D0033853molecular_functionaspartate-prephenate aminotransferase activity
D0033854molecular_functionglutamate-prephenate aminotransferase activity
Functional Information from PDB Data
site_idAC1
Number of Residues14
Detailsbinding site for residue PLP A 501
ChainResidue
AGLY120
ALYS259
AARG267
AHOH625
AHOH659
BTYR85
AALA121
ALYS122
ATRP146
AASN196
AASP225
AILE227
ATYR228
ASER258

site_idAC2
Number of Residues7
Detailsbinding site for residue NA A 502
ChainResidue
AGLU105
AHIS238
AHOH711
AHOH757
AHOH802
AHOH828
AHOH861

site_idAC3
Number of Residues6
Detailsbinding site for residue NA B 502
ChainResidue
BGLU105
BHOH677
BHOH786
BHOH830
BHOH847
BHOH884

site_idAC4
Number of Residues9
Detailsbinding site for residue CIT B 503
ChainResidue
BGLY60
BLYS122
BTRP146
BASN196
BARG398
BHOH604
BHOH607
BHOH811
BHOH828

site_idAC5
Number of Residues7
Detailsbinding site for residue CIT C 502
ChainResidue
CGLY60
CLYS122
CTRP146
CASN196
CARG398
CHOH617
CHOH755

site_idAC6
Number of Residues7
Detailsbinding site for residue CIT D 502
ChainResidue
DGLY60
DLYS122
DTRP146
DASN196
DARG398
DHOH601
DHOH759

site_idAC7
Number of Residues22
Detailsbinding site for Di-peptide PLP B 501 and LYS B 259
ChainResidue
ATYR85
AHOH710
BGLY60
BPRO62
BGLY120
BALA121
BLYS122
BTRP146
BASN196
BASP225
BILE227
BTYR228
BILE231
BPHE257
BSER258
BALA260
BPHE261
BALA262
BARG267
BHOH607
BHOH640
BHOH714

site_idAC8
Number of Residues21
Detailsbinding site for Di-peptide PLP C 501 and LYS C 259
ChainResidue
CGLY60
CGLY120
CALA121
CLYS122
CTRP146
CASN196
CASP225
CILE227
CTYR228
CILE231
CPHE257
CSER258
CALA260
CPHE261
CALA262
CARG267
CHOH617
CHOH656
CHOH670
DTYR85
DHOH656

site_idAC9
Number of Residues21
Detailsbinding site for Di-peptide PLP D 501 and LYS D 259
ChainResidue
DLYS122
DTRP146
DASN196
DASP225
DTYR228
DILE231
DPHE257
DSER258
DALA260
DPHE261
DARG267
DHOH601
DHOH639
DHOH641
DHOH649
CTYR85
CHOH660
DGLY60
DPRO62
DGLY120
DALA121

Functional Information from PROSITE/UniProt
site_idPS00105
Number of Residues14
DetailsAA_TRANSFER_CLASS_1 Aminotransferases class-I pyridoxal-phosphate attachment site. GFSKafAMtGWRLG
ChainResidueDetails
AGLY256-GLY269

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues16
DetailsBINDING: BINDING => ECO:0000250
ChainResidueDetails
AGLY60
CTRP146
CASN196
CARG398
DGLY60
DTRP146
DASN196
DARG398
ATRP146
AASN196
AARG398
BGLY60
BTRP146
BASN196
BARG398
CGLY60

site_idSWS_FT_FI2
Number of Residues4
DetailsMOD_RES: N6-(pyridoxal phosphate)lysine => ECO:0000250
ChainResidueDetails
ALYS259
BLYS259
CLYS259
DLYS259

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PDB entries from 2024-07-24

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