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6ETG

Crystal structure of KDM4D with tetrazolhydrazide compound 6

Functional Information from PDB Data
site_idAC1
Number of Residues4
Detailsbinding site for residue ZN A 401
ChainResidue
ACYS238
AHIS244
ACYS310
ACYS312

site_idAC2
Number of Residues7
Detailsbinding site for residue NI A 402
ChainResidue
AHOH620
AHOH689
AHIS192
AGLU194
AHIS280
ABWT415
AHOH599

site_idAC3
Number of Residues5
Detailsbinding site for residue EDO A 403
ChainResidue
AARG123
ALYS124
ALYS127
AASN128
AHOH564

site_idAC4
Number of Residues8
Detailsbinding site for residue EDO A 404
ChainResidue
ALYS150
AGLN151
ATRP152
AASN153
AHIS156
AHOH527
AHOH641
AHOH734

site_idAC5
Number of Residues5
Detailsbinding site for residue EDO A 405
ChainResidue
APRO251
ATHR252
ALYS255
AARG263
AHOH513

site_idAC6
Number of Residues5
Detailsbinding site for residue EDO A 406
ChainResidue
APHE118
AARG263
AILE264
ATHR265
AHOH725

site_idAC7
Number of Residues6
Detailsbinding site for residue EDO A 407
ChainResidue
ALYS109
AGLN111
AASN132
ATRP185
ALYS186
AHOH519

site_idAC8
Number of Residues7
Detailsbinding site for residue EDO A 408
ChainResidue
APHE31
AASP32
AGLY158
APHE295
AALA296
AHOH520
AHOH723

site_idAC9
Number of Residues6
Detailsbinding site for residue EDO A 409
ChainResidue
ATYR181
AGLU194
ASER200
AALA292
AASN294
ABWT415

site_idAD1
Number of Residues3
Detailsbinding site for residue EDO A 410
ChainResidue
AGLU56
ATRP57
AGLN151

site_idAD2
Number of Residues5
Detailsbinding site for residue EDO A 411
ChainResidue
AASN176
AASP195
AASN294
ASER320
AHOH623

site_idAD3
Number of Residues8
Detailsbinding site for residue SO4 A 412
ChainResidue
AARG60
AGLU61
ATHR62
AASN65
AHOH510
AHOH514
AHOH571
AHOH824

site_idAD4
Number of Residues6
Detailsbinding site for residue SO4 A 413
ChainResidue
AARG102
AHIS103
AASN106
AHOH572
AHOH858
AHOH874

site_idAD5
Number of Residues10
Detailsbinding site for residue SO4 A 414
ChainResidue
AMET19
AILE20
ALYS255
AHOH591
AHOH632
AHOH716
AHOH872
AHOH904
AHOH908
AHOH961

site_idAD6
Number of Residues17
Detailsbinding site for residue BWT A 415
ChainResidue
AHOH620
AHOH682
AHOH689
ATYR136
ATHR187
ATHR188
APHE189
AHIS192
AGLU194
AHIS280
AASN284
ANI402
AEDO409
AHOH517
AHOH559
AHOH599
AHOH612

site_idAD7
Number of Residues6
Detailsbinding site for residue NA A 416
ChainResidue
AASN17
AASN262
AHOH568
AHOH686
AHOH847
AHOH847

site_idAD8
Number of Residues2
Detailsbinding site for residue CL A 417
ChainResidue
AASN128
ALYS186

Functional Information from SwissProt/UniProt
site_idSWS_FT_FI1
Number of Residues4
DetailsBINDING: BINDING => ECO:0000250|UniProtKB:B2RXH2
ChainResidueDetails
ATYR136
AASN202
ALYS210
ALYS245

site_idSWS_FT_FI2
Number of Residues3
DetailsBINDING: BINDING => ECO:0000255|PROSITE-ProRule:PRU00538, ECO:0000305|PubMed:26741168
ChainResidueDetails
AHIS192
AGLU194
AHIS280

site_idSWS_FT_FI3
Number of Residues4
DetailsBINDING: BINDING => ECO:0007744|PDB:5F5A, ECO:0007744|PDB:5F5C
ChainResidueDetails
ACYS238
AHIS244
ACYS310
ACYS312

site_idSWS_FT_FI4
Number of Residues2
DetailsMOD_RES: PolyADP-ribosyl glutamic acid => ECO:0000269|PubMed:23102699
ChainResidueDetails
AGLU26
AGLU27

219140

PDB entries from 2024-05-01

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